View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21055_low_4 (Length: 443)
Name: NF21055_low_4
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21055_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 8936295 - 8935875
Alignment:
| Q |
20 |
gaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaatttacat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936295 |
gaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaatttacat |
8936196 |
T |
|
| Q |
120 |
gaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaattctcaaggtggccatgtttatgccattgcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8936195 |
gaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaattctcaaggtggccatgtttatgctattgcc |
8936096 |
T |
|
| Q |
220 |
ggggatttgaaggttagagactataaagatgatgactgtcacgtggaggttgttacgccgatatcctttttccgttataattatagctctagggagtgga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8936095 |
ggggatttgaaggttagagactataaagatgatgactgtcacgtggaggttgttacgccgatatcctttttccgttataattatagctctaaggagtgga |
8935996 |
T |
|
| Q |
320 |
atactcccgatggaaagttttcgtacatggacaaaagttacccaagttattataaaaataaatggaaggttccgaatcaaatgtttgattacagtgaaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8935995 |
atactcccgatggaaagttttcgtacatggacaaaagttacccaagttattataaaaataaatggaaggttccgaatcaaatgtttgattacagtgaaat |
8935896 |
T |
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| Q |
420 |
tcataggatgttggtgagtgg |
440 |
Q |
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| T |
8935895 |
tcataggatgttggtgagtgg |
8935875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 89 - 440
Target Start/End: Complemental strand, 8924603 - 8924264
Alignment:
| Q |
89 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaa |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
8924603 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatgcagcttcttgcgtgaacaagtcgaa |
8924504 |
T |
|
| Q |
189 |
ttctcaaggtggccatgtttatgccattgccggggatttgaaggttagagactataaagatgatgactgtcacgtggaggttgttacgccgatatccttt |
288 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
8924503 |
ttctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgtgggggttgttacgccaatatctttt |
8924404 |
T |
|
| Q |
289 |
ttccgttataattatagctctagggagtggaatactcccgatggaaagttttcgtacatggacaaaagttacccaagttattataaaaataaatggaagg |
388 |
Q |
| |
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||| |||||||||| |||||| ||| ||| |||||||||||||||||||||||||| ||||| |||| ||| | || ||||||||| |
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| T |
8924403 |
ttctgttataattacagctctgaggattggcatactcccgatggaaagttttcgtacgaggacagtagtttccc------------atatgaatggaagg |
8924316 |
T |
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| Q |
389 |
ttccgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtgg |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8924315 |
ttccgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtgg |
8924264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 89 - 443
Target Start/End: Complemental strand, 8959765 - 8959426
Alignment:
| Q |
89 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaa |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
8959765 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatgcagcttcttgcgtgaacaagtcgaa |
8959666 |
T |
|
| Q |
189 |
ttctcaaggtggccatgtttatgccattgccggggatttgaaggttagagactataaagatgatgactgtcacgtggaggttgttacgccgatatccttt |
288 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
8959665 |
ttctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgtgggggttgttacgccaatatctttt |
8959566 |
T |
|
| Q |
289 |
ttccgttataattatagctctagggagtggaatactcccgatggaaagttttcgtacatggacaaaagttacccaagttattataaaaataaatggaagg |
388 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || | |||||| |||| || ||| |
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| T |
8959565 |
ttccgttataattacagctctgaggagtggaatactcccgatggaaagttttcgtac---------agtgacgc---ggattatagaaatgaacgga--- |
8959481 |
T |
|
| Q |
389 |
ttccgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggatt |
443 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
8959480 |
ttccgaatcaaatgtttgattacagtgaaattcatagcatgttggtgggtggatt |
8959426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 8945773 - 8945629
Alignment:
| Q |
87 |
aacattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcg |
186 |
Q |
| |
|
|||||||| | | |||||||||||| ||||||||||||| |||| |||| | ||||||||| | ||| | |||||||| | ||||||| |||||| |
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| T |
8945773 |
aacattacgactattccagcacgtagtttacatgaattgcagcaatcctatactggatgatccagcgtacgtggatgcagattcttgcat---caagtcc |
8945677 |
T |
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| Q |
187 |
aattctcaaggtggccatgtttatgccattgccggggatttgaaggtt |
234 |
Q |
| |
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||||| |||||||||||||||||| ||||||| || |||||||||||| |
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| T |
8945676 |
aattcccaaggtggccatgtttataccattgctggagatttgaaggtt |
8945629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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