View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21055_low_8 (Length: 305)

Name: NF21055_low_8
Description: NF21055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21055_low_8
NF21055_low_8
[»] chr1 (4 HSPs)
chr1 (3-287)||(10421223-10421507)
chr1 (176-287)||(10411757-10411868)
chr1 (183-235)||(10417484-10417536)
chr1 (5-63)||(10416339-10416397)
[»] chr5 (7 HSPs)
chr5 (3-170)||(35366233-35366400)
chr5 (167-287)||(35365152-35365272)
chr5 (176-287)||(35404873-35404984)
chr5 (175-287)||(35374695-35374807)
chr5 (5-156)||(35423049-35423200)
chr5 (112-156)||(35754201-35754245)
chr5 (5-63)||(35375886-35375944)
[»] chr7 (2 HSPs)
chr7 (5-156)||(29623776-29623927)
chr7 (182-227)||(29624917-29624962)
[»] chr2 (3 HSPs)
chr2 (183-287)||(30669991-30670095)
chr2 (183-287)||(30661311-30661415)
chr2 (183-287)||(30633582-30633686)
[»] chr8 (1 HSPs)
chr8 (175-221)||(13563720-13563766)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 10421223 - 10421507
Alignment:
Q  3 agagattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcatagggtattgtacttgagagactgttattagacatgtctaatat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421223 agagattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcatagggtattgtacttgagagactgttattagacatgtctaatat 10421322  T
Q  103 ttctagagatcttaaagaacccaagaatgaaggtataactccatggaaaaagttgttcttcaacacaataaattcaaacttgacaacttacccaaagaat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421323 ttctagagatcttaaagaacccaagaatgaaggtataactccatggaaaaagttgttcttcaacacaataaattcaaacttgacaacttacccaaagaat 10421422  T
Q  203 caggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggatagtacc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421423 caggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggatagtacc 10421507  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 10411757 - 10411868
Alignment:
Q  176 tcaaacttgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaaga 275  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||  || ||| |||  ||  |||||||||  ||| |||||||||||    
T  10411757 tcaaacctgacaacctacccaaagaataaggtatgctttcttccaagtgattttgttgaaatgaaagcattttgagtgatgaaagatttcctagggaaga 10411856  T
Q  276 tgggatagtacc 287  Q
    ||| ||||||||    
T  10411857 tggaatagtacc 10411868  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 10417484 - 10417536
Alignment:
Q  183 tgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaa 235  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  10417484 tgacaacctacccaaagaataaggtatgcttccttccaagtgattttctgtaa 10417536  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 10416339 - 10416397
Alignment:
Q  5 agattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcataggg 63  Q
    ||||||||||||||||  | ||||||||| |||| ||| ||||||||||||||| ||||    
T  10416339 agattgttaaaagacaagtccaaagtattcaaaaatgttagattttctagttcagaggg 10416397  T

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Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 35366400 - 35366233
Alignment:
Q  3 agagattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcatagggtattgtacttgagagactgttattagacatgtctaatat 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||    
T  35366400 agagattgttaaaagacaggttcaaagtatttaaaagtgtgagattttctagttcaaagggtattgtacttgagaaactgttattagaaatgtctaatat 35366301  T
Q  103 ttctagagatcttaaagaacccaagaatgaaggtataactccatggaaaaagttgttcttcaacacaa 170  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35366300 ttctaaagatcttaaagaacccaagaatgaaggtatacctccatggaaaaagttgttcttcaacacaa 35366233  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 35365272 - 35365152
Alignment:
Q  167 acaataaattcaaacttgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||| ||||||||| |||| ||    
T  35365272 acaataaattcaaacttgacaacttacccaaagaatcaggtatgcttccttccaggtgattttgtgtaagtgatatattttggagtgatgaaacatttcc 35365173  T
Q  267 tagggaagatgggatagtacc 287  Q
    |||||| ||||||||||||||    
T  35365172 tagggaggatgggatagtacc 35365152  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 35404984 - 35404873
Alignment:
Q  176 tcaaacttgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaaga 275  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| || ||||| |||| |||| |||||||||  |||  ||||||||||    
T  35404984 tcaaacttgacaacctacccaaagaataaggtatgcttccttcaaagtgattttctggaagtgctagcaattggagtgatgaaaaatttgctagggaaga 35404885  T
Q  276 tgggatagtacc 287  Q
    ||| ||||||||    
T  35404884 tggaatagtacc 35404873  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 35374807 - 35374695
Alignment:
Q  175 ttcaaacttgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaag 274  Q
    ||||||||||||||| |||||||||||  |||||| ||||||| |||||||||||||  ||||||||    ||| ||||||||| |||| || | ||| |    
T  35374807 ttcaaacttgacaacatacccaaagaacaaggtattcttcctttcaagtgattttgtccaagtgatatattttggagtgatgaaacatttcccatggatg 35374708  T
Q  275 atgggatagtacc 287  Q
    |||| ||||||||    
T  35374707 atggaatagtacc 35374695  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 35423200 - 35423049
Alignment:
Q  5 agattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcatagggtattgtacttgagagactgttattagacatgtctaatattt 104  Q
    ||||||||||||||||  | ||||||||| |||  |   | |||||||||||||  ||| ||||| ||||| | ||| ||||| || |||||||| | ||    
T  35423200 agattgttaaaagacaagtccaaagtattcaaatatactaaattttctagttcaagggggattgtgcttgaaaaactattatttgaaatgtctaagactt 35423101  T
Q  105 ctagagatcttaaagaacccaagaatgaaggtataactccatggaaaaagtt 156  Q
    |||| |||||||| || ||||||||  ||||||||   ||||||||||||||    
T  35423100 ctagggatcttaatgatcccaagaaccaaggtatactgccatggaaaaagtt 35423049  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 35754245 - 35754201
Alignment:
Q  112 tcttaaagaacccaagaatgaaggtataactccatggaaaaagtt 156  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||    
T  35754245 tcttaaagagcccaagaacgaaggtatatctccatggaaaaagtt 35754201  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 35375944 - 35375886
Alignment:
Q  5 agattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcataggg 63  Q
    ||||||||||||||||  | ||||||||| |||| ||| ||||||||||||||| ||||    
T  35375944 agattgttaaaagacaagtccaaagtattcaaaaatgttagattttctagttcagaggg 35375886  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 29623776 - 29623927
Alignment:
Q  5 agattgttaaaagacagattcaaagtatttaaaagtgtgagattttctagttcatagggtattgtacttgagagactgttattagacatgtctaatattt 104  Q
    ||||||||||||||||  |||||||| || |||| | | || |||||||||||| | || ||||||||||||| ||| || ||||| |||||||| ||||    
T  29623776 agattgttaaaagacaagttcaaagtcttcaaaaatcttagtttttctagttcaaaagggattgtacttgagaaactattgttagaaatgtctaagattt 29623875  T
Q  105 ctagagatcttaaagaacccaagaatgaaggtataactccatggaaaaagtt 156  Q
    | |  ||||||||||| |||||||| |||||||||  |||||| || |||||    
T  29623876 ccaaggatcttaaagagcccaagaacgaaggtatacttccatgcaagaagtt 29623927  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 29624917 - 29624962
Alignment:
Q  182 ttgacaacttacccaaagaatcaggtatgcttccttccaagtgatt 227  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  29624917 ttgacaacttacctaaagaataaggtatgtttccttccaagtgatt 29624962  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 30670095 - 30669991
Alignment:
Q  183 tgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggata 282  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||||  || ||| |||  ||  |||||||||  ||| |||||||||||||| |||    
T  30670095 tgacaacctacccaaagaatatggtatgcttccttccaagtgattttgtcgaaatgaaagcttttcgagtgatgaaagatttcctagggaagatggaata 30669996  T
Q  283 gtacc 287  Q
    |||||    
T  30669995 gtacc 30669991  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 30661415 - 30661311
Alignment:
Q  183 tgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggata 282  Q
    ||||||| | ||||||||||  |||||||||||||||||||||||||||  || ||| |||  ||  |||||||||  ||| |||||||||||||| |||    
T  30661415 tgacaacctgcccaaagaatatggtatgcttccttccaagtgattttgtagaaatgaaagcttttcgagtgatgaaagatttcctagggaagatggaata 30661316  T
Q  283 gtacc 287  Q
    |||||    
T  30661315 gtacc 30661311  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 30633686 - 30633582
Alignment:
Q  183 tgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggata 282  Q
    ||||||| ||||||||||||  ||||||||||||||||| ||||||||   || ||| |||  ||  |||||||||  ||| |||| ||||||||| |||    
T  30633686 tgacaacctacccaaagaatatggtatgcttccttccaattgattttgaagaaatgaaagcttttcgagtgatgaaagatttcctatggaagatggaata 30633587  T
Q  283 gtacc 287  Q
    |||||    
T  30633586 gtacc 30633582  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 13563766 - 13563720
Alignment:
Q  175 ttcaaacttgacaacttacccaaagaatcaggtatgcttccttccaa 221  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  13563766 ttcaagcttgacaacctacccaaagaataaggtatgcttccttccaa 13563720  T

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