View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_high_12 (Length: 252)
Name: NF21056_high_12
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 40894720 - 40894938
Alignment:
| Q |
21 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
120 |
Q |
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| T |
40894720 |
tgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatg |
40894819 |
T |
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| Q |
121 |
cgaatgatgattctgaagatgattagtt---tgatgattttgaaggcaacaccaaaatctcttgcgacaatgacaagcgaaaaatgtcacttgatgtata |
217 |
Q |
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| T |
40894820 |
caaatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgtcacttgatgtata |
40894919 |
T |
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| Q |
218 |
atagtaatagtagatgttc |
236 |
Q |
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| T |
40894920 |
atagtaatagtagatgttc |
40894938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 44153575 - 44153434
Alignment:
| Q |
21 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
120 |
Q |
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| T |
44153575 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
44153476 |
T |
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| Q |
121 |
cgaatgatgattctgaagatgattagtttgatgattttgaag |
162 |
Q |
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| T |
44153475 |
cgaatgatgattctgaagacgattagtttgatgattctgaag |
44153434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 40898301 - 40898077
Alignment:
| Q |
24 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagc---tctgatgtgccgaagtggaaatcagcagatg |
120 |
Q |
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| T |
40898301 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatcagcagatg |
40898202 |
T |
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| Q |
121 |
cgaatgatgatt------------ctgaagatg-attagtttgatgattttgaaggcaacaccaaaatctcttgcgacaatgacaagcgaaaaatgtcac |
207 |
Q |
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| T |
40898201 |
caaatgatgattctgtttttggtgctgattatgccttagtttgatgattctgaaggcaaaaccaaaatctcttgcgacaatgacaagcgaaaaatgtc-- |
40898104 |
T |
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| Q |
208 |
ttgatgtataatagtaatagtagatgttcat |
238 |
Q |
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| T |
40898103 |
----tgtataatagtaatagtagatgttcat |
40898077 |
T |
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