View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_high_2 (Length: 582)
Name: NF21056_high_2
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 255 - 564
Target Start/End: Complemental strand, 38052670 - 38052363
Alignment:
| Q |
255 |
ttggctttcaacttctgaagcgtggtgaacttatatattcgtttagtggtnnnnnnnnttgaggtaccggattgaagagattgaatgctttttgtatata |
354 |
Q |
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| T |
38052670 |
ttggctttcaacttctcaagcgtggtgaacttatatattcgtttagtggtaaaaaaaattgaggtaccggattgaagagattgaatattttttgtatata |
38052571 |
T |
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| Q |
355 |
cttgtgtcatgtccaaataagttatctagatgtctcttaacgattcttaatgtccaaataagctctctagataactcttaatgacatgtttgatccatga |
454 |
Q |
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| T |
38052570 |
cttgtgtcatgtccaaataagttctctagatgtctcttaacgactcttaatgtccaaatacgctctctagataactcttaatgacatgtttgatcaatga |
38052471 |
T |
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| Q |
455 |
tgaaagctcaagagccatcttttgctcacaagtagcaattgaagcaatatgtcatttataagtttctaacaaaacataaaatcctacggagcccatcaaa |
554 |
Q |
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| T |
38052470 |
tgaaagctca--agccatcttttgctcacaagtagcaattgaagcaatatgtcatttataagtttctaacaaaacataaaatcctacggagcccatcaaa |
38052373 |
T |
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| Q |
555 |
caatatcata |
564 |
Q |
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|||||||||| |
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| T |
38052372 |
caatatcata |
38052363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 38053189 - 38053046
Alignment:
| Q |
11 |
cacagagtggacggaaatataattcaacaaaccaaattaattcgttaggtcgtttgattagtattcgtaatatcaatcattttccatattataaataaca |
110 |
Q |
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|||||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38053189 |
cacagagtggtcggaaatataattcaacgaatcaaattaatttgttagatcgtttgattagtattcgtaatatcaatcattttccatattataagtaaca |
38053090 |
T |
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| Q |
111 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
154 |
Q |
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| T |
38053089 |
ttcctaacatgtctaattaatgcaaagtttaacatagaataaag |
38053046 |
T |
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