View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_high_3 (Length: 510)
Name: NF21056_high_3
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 43201362 - 43201615
Alignment:
| Q |
1 |
aagaagaaaggaaaatattggtagaaaatataagtgtacttaaaaggcaaggtatatacaaaggacataattgtccacctannnnnnnaaagtaaaagaa |
100 |
Q |
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| T |
43201362 |
aagaagaaaggaaaatattggtagaaaatataagtgtacttaaaaggcaaggtatatacaaaggacataattgtccacctatttttttaaagtaaaagaa |
43201461 |
T |
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| Q |
101 |
atagtattcaatagacaagaataggattgttgtgctgtaatatacctagaaagaaagcgtgtgagaaattaaagagtaatatttagaagaaaaagataat |
200 |
Q |
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| T |
43201462 |
atagtattcaatagacaagaataggattgttgtgctgtaatatacctagaaagaaagcgtgtgagaaattaaagagtggtatttagaagaaaaagataat |
43201561 |
T |
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| Q |
201 |
tgtttttcttgtacgaggattttctgaactataaatattgactactagctaatt |
254 |
Q |
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| T |
43201562 |
tgtttttcttgtacgaggattttctgaactataaatattgactactagctaatt |
43201615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 269 - 495
Target Start/End: Original strand, 43201685 - 43201911
Alignment:
| Q |
269 |
tatttgtttgtgaggtataaatgccagctcaatgagtagttactcacgtgtgagttcttaaatgtgattgactttcttaatagttttctgattcaattgc |
368 |
Q |
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| T |
43201685 |
tatttgtttgtgaggtataaatgccagctcaatgagtagttactcacgtgtgagttcttaaatgtgattgactttcttaatagttttctgattcaattgc |
43201784 |
T |
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| Q |
369 |
atccatgcatgtggttcttgcttcttattgaggtagctggaggacaggtctacctttttggcactctttctgtacttctaaatctatatattatcaatac |
468 |
Q |
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| T |
43201785 |
atccatgcatgtggttcttgcttcttattgaggtagctggaggacaggtctacctttttggcactctttctgtacttctaaatatatatattatcaatac |
43201884 |
T |
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| Q |
469 |
caataaattgagtatgtttgtgttaat |
495 |
Q |
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| T |
43201885 |
caataaattgagtatgtttgtgttaat |
43201911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 36233394 - 36233426
Alignment:
| Q |
311 |
ctcacgtgtgagttcttaaatgtgattgacttt |
343 |
Q |
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| T |
36233394 |
ctcacgtgtgagttcttaaatgtgtttgacttt |
36233426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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