View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21056_high_4 (Length: 442)

Name: NF21056_high_4
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21056_high_4
NF21056_high_4
[»] chr7 (9 HSPs)
chr7 (133-442)||(42852918-42853226)
chr7 (19-132)||(42853316-42853429)
chr7 (135-442)||(42854813-42855115)
chr7 (135-251)||(42848454-42848570)
chr7 (343-442)||(42848257-42848352)
chr7 (19-83)||(42856929-42856993)
chr7 (19-83)||(42861006-42861070)
chr7 (135-251)||(42860713-42860830)
chr7 (135-251)||(42856636-42856753)
[»] chr4 (2 HSPs)
chr4 (136-327)||(27148-27350)
chr4 (29-83)||(27512-27566)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 133 - 442
Target Start/End: Complemental strand, 42853226 - 42852918
Alignment:
Q  133 atcttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactggtattgcatgccgttgcaataacatctca 232  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853226 atcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttcactaactggtattgcatgccgttgcaataacatctca 42853127  T
Q  233 tagctggaaggtaaaatgttattgctgtcaagtaaaatcgacaagaatgaaaaagaatactgtgatatatcttatgcacatattatatcgtatcttcgtn 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||     
T  42853126 tagctggaaggtaaaatgttattgctgtcaagtaaaatcgacaagaatgaaaaagaataacgtgatatatcttatgcacatattatatcgtatcttcgt- 42853028  T
Q  333 nnnnnnnnnccaaagcatgtggaacacacatagacagagattaatctaatcgacttaattaatgacatatgtactgcagtaatccaaatcaataactttg 432  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  42853027 aaaaaaaaaccaaagcatgtggaacacacatagacagagattaatctaatcgacttaattcatgacatatgtactgtagtaatccaaatcaataactttg 42852928  T
Q  433 atagaatggc 442  Q
    ||||||||||    
T  42852927 atagaatggc 42852918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 42853429 - 42853316
Alignment:
Q  19 aacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaacacattgtcaaaactcaacagaatatagtctttgaaatttacttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42853429 aacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaatatagtctttgaaatttacttct 42853330  T
Q  119 agaatcatacatct 132  Q
    ||||||||||||||    
T  42853329 agaatcatacatct 42853316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 442
Target Start/End: Complemental strand, 42855115 - 42854813
Alignment:
Q  135 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 233  Q
    ||||||||| ||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||| ||| |  || ||||||||||| ||| ||| ||     
T  42855115 cttttaacatgccctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctg-atgccgttgcattaagatcacaa 42855017  T
Q  234 agctggaaggtaaaatgtta--ttgctgtcaagtaaaatcgacaagaatgaaaaagaatactgtgatatatcttatgcacatattatatcgtatcttcgt 331  Q
    ||||||||| |||||||| |  |  || | |      |||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||  ||    
T  42855016 agctggaagttaaaatgtaaaatatctattattgcggatcgacaagaatgagaaagaataccatgatatatcttatgcacatattatattgtatctgagt 42854917  T
Q  332 nnnnnnnnnnccaaagcatgtggaacacacatagacagagattaatctaatcgacttaattaatgacatatgtactgcagtaatccaaatcaataacttt 431  Q
              | || ||| || |||||  ||| |||||||| ||||||||| |||    |||| ||||||| ||||||||| |||| |||||||||||||    
T  42854916 ---caaaaaacaaaggcaggtcgaacatccattgacagagagtaatctaattgac----ttaaggacatatatactgcagtgatcctaatcaataacttt 42854824  T
Q  432 gatagaatggc 442  Q
    |||||||||||    
T  42854823 gatagaatggc 42854813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 42848570 - 42848454
Alignment:
Q  135 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 233  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||  ||| | ||| |||| |||||| ||| ||| ||     
T  42848570 cttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttg-atgcagttgcattaagatcacaa 42848472  T
Q  234 agctggaaggtaaaatgt 251  Q
    ||||||||||||||||||    
T  42848471 agctggaaggtaaaatgt 42848454  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 442
Target Start/End: Complemental strand, 42848352 - 42848257
Alignment:
Q  343 caaagcatgtggaacacacatagacagagattaatctaatcgacttaattaatgacatatgtactgcagtaatccaaatcaataactttgatagaatggc 442  Q
    ||||||| ||||||||| | |||||||||| ||||||||| |||||||     ||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  42848352 caaagcaggtggaacacccgtagacagagagtaatctaattgacttaag----gacatatatactgcagtgatcctaatcaataactttgatagaatggc 42848257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 42856993 - 42856929
Alignment:
Q  19 aacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaacacattgtcaa 83  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  42856993 aacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaa 42856929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 42861070 - 42861006
Alignment:
Q  19 aacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaacacattgtcaa 83  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  42861070 aacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaa 42861006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 42860830 - 42860713
Alignment:
Q  135 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 233  Q
    |||| ||||||||||| ||||||||||||||||||||  | ||||||| ||||||||||||| ||| ||| | ||| ||||||||||| ||| ||| ||     
T  42860830 ctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcctccctttctgcatttcagtaattggctgttg-atgccgttgcattaagatcacaa 42860732  T
Q  234 agctgg-aaggtaaaatgt 251  Q
    |||||| ||||||||||||    
T  42860731 agctggaaaggtaaaatgt 42860713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 42856753 - 42856636
Alignment:
Q  135 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 233  Q
    |||| ||||||||||| ||||||||||||||||||||  | ||| ||| ||||||||||||| ||| ||| | ||| ||||||||||| ||| ||| ||     
T  42856753 ctttgaacaggccctcatccaggcgttttgaaagatctgtaatcttccctttctgcatttcagtaattggctgttg-atgccgttgcattaagatcacaa 42856655  T
Q  234 agctgg-aaggtaaaatgt 251  Q
    |||||| ||||||||||||    
T  42856654 agctggaaaggtaaaatgt 42856636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 327
Target Start/End: Complemental strand, 27350 - 27148
Alignment:
Q  136 ttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcata 234  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||| || |||||||||| ||| |  || ||||||| | |||||| ||||| |    
T  27350 ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaattggctgctg-atgccgtcgaaataacgtctcaca 27252  T
Q  235 gctggaaggtaaaatg-----------ttattgctgtcaagtaaaatcgacaagaatgaaaaagaatactgtgatatatcttatgcacatattatatcgt 323  Q
    |||| || ||||||||           |||||||  | | |||||||| ||||||||||||||||||||   |||||||||||||||||||||| || ||    
T  27251 gctgcaatgtaaaatgtaaaatattaattattgccattatgtaaaatcaacaagaatgaaaaagaataccacgatatatcttatgcacatattacattgt 27152  T
Q  324 atct 327  Q
    ||||    
T  27151 atct 27148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 27566 - 27512
Alignment:
Q  29 tagtgtatccaagttcatgtagtcctcctaaaagacgagtccaacacattgtcaa 83  Q
    |||||| |||||||||||||| |||||||||||||| |||| || ||||||||||    
T  27566 tagtgtttccaagttcatgtactcctcctaaaagacaagtcgaaaacattgtcaa 27512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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