View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_high_8 (Length: 318)
Name: NF21056_high_8
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 43917390 - 43917094
Alignment:
| Q |
15 |
actttcttgggcctctcattgctactatatgtgtatgggtattgggaggagaaaatcaggaaatactatgaaatacatgctctgagtttttgtttcctta |
114 |
Q |
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| T |
43917390 |
actttcttgggcctctcattgctactatatgtgtatgggtattgggaggagaaaatcaggaaatactatgaaatacatgctctgagtttttgtttcccta |
43917291 |
T |
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| Q |
115 |
tgttgttaccaggactctggtttcccctgctttaaatgtggtccacggacaatacagaacctaagaaagcgattccatctcagtttaactgaagaggttt |
214 |
Q |
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| T |
43917290 |
tgttgttaccaggactctggtttcccctgctttaaatgtggtccacggacgatacagaacctaagaaagcgattccatctcagtttaactgaagaggttt |
43917191 |
T |
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| Q |
215 |
taattcattataaaatactagttttctttctcagctgtaagctttttgcctgtgattgttatatcttttgatctccttgcagcaatgtgtacctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
43917190 |
taattcattataaaatactagttttctttctcagctgtaagctttttgcctgtgattgttatatcttttgttctccttgcagcaatgtgtatctttg |
43917094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 39129392 - 39129493
Alignment:
| Q |
112 |
ttatgttgttaccaggactctggtttcccctgctttaaatgtggtccacggacaatacagaacctaagaaagcgattccatctcagtttaactgaagagg |
211 |
Q |
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|||||||| || ||||| || ||||| |||||||||||| ||||| ||| || ||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
39129392 |
ttatgttggtatcaggattcgggttttccctgctttaaaggtggtatacgtacgatacagaacttacgaaagcgattccatctcagtttaacagaagagg |
39129491 |
T |
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| Q |
212 |
tt |
213 |
Q |
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|| |
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| T |
39129492 |
tt |
39129493 |
T |
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