View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21056_high_9 (Length: 291)

Name: NF21056_high_9
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21056_high_9
NF21056_high_9
[»] scaffold0238 (1 HSPs)
scaffold0238 (15-270)||(12576-12831)
[»] chr1 (2 HSPs)
chr1 (15-270)||(12604113-12604356)
chr1 (52-147)||(23261389-23261477)
[»] chr2 (2 HSPs)
chr2 (17-270)||(10452736-10452995)
chr2 (52-109)||(14455914-14455971)
[»] chr6 (1 HSPs)
chr6 (56-112)||(21547848-21547904)
[»] chr4 (2 HSPs)
chr4 (52-147)||(56478470-56478558)
chr4 (56-121)||(6898330-6898395)
[»] chr7 (1 HSPs)
chr7 (56-121)||(39741872-39741937)
[»] chr5 (1 HSPs)
chr5 (190-270)||(33619228-33619307)


Alignment Details
Target: scaffold0238 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 12576 - 12831
Alignment:
Q  15 catcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgt 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  12576 catcatctgaagagtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatgttgattttgattga 12675  T
Q  115 caatttcgttggcaatttgaccgacgattccatcattagttatactatttgaatttgattttggattttaattcatttctactttaggttttagattgca 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12676 caatttcgttggcaatgtgaccgacgattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgca 12775  T
Q  215 tcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12776 tcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 12831  T

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Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 12604356 - 12604113
Alignment:
Q  15 catcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgt 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||     
T  12604356 catcatctgaagagtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgat------------tga 12604269  T
Q  115 caatttcgttggcaatttgaccgacgattccatcattagttatactatttgaatttgattttggattttaattcatttctactttaggttttagattgca 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12604268 caatttcgttggcaatttgaccgaccattccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgca 12604169  T
Q  215 tcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12604168 tcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 12604113  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 23261389 - 23261477
Alignment:
Q  52 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccat 147  Q
    ||||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||    
T  23261389 tttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccat 23261477  T

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Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 10452736 - 10452995
Alignment:
Q  17 tcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtca 116  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  10452736 tcatctgaagagtgatgacataggtatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatatcgattttgattgaca 10452835  T
Q  117 atttcgttggcaatttgaccgacgattccatcattagttatactatttgaa------tttgattttggattttaattcatttctactttaggttttagat 210  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||||||||||||||||||    
T  10452836 atttcgttggcaatttgactaacgattccatcattagttatactatttgaattttattttgattttggatttttattcatttctactttaggttttagat 10452935  T
Q  211 tgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 270  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  10452936 tgcatcatgtgccatgttacaatggatgggaggatcaaggcttaaagctacgacagtgag 10452995  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 14455971 - 14455914
Alignment:
Q  52 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttg 109  Q
    |||||||||||||||||||||| |||||| |||||||||  |||| |||| |||||||    
T  14455971 tttgttctttctcaatttcttactcaatttgttctttctcgatttaatatcgattttg 14455914  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 21547904 - 21547848
Alignment:
Q  56 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgatt 112  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||| ||||||||||    
T  21547904 ttctttctcaatttcttattcagttttttctttctcaatttgatatcgattttgatt 21547848  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 56478558 - 56478470
Alignment:
Q  52 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccat 147  Q
    ||||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||    
T  56478558 tttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccat 56478470  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 6898395 - 6898330
Alignment:
Q  56 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 121  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  6898395 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 6898330  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 39741937 - 39741872
Alignment:
Q  56 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 121  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  39741937 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 39741872  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 33619307 - 33619228
Alignment:
Q  190 tttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 270  Q
    |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| ||  ||||||||    
T  33619307 tttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag 33619228  T

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