View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_low_1 (Length: 587)
Name: NF21056_low_1
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 235 - 581
Target Start/End: Complemental strand, 35744757 - 35744411
Alignment:
| Q |
235 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
334 |
Q |
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| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
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| Q |
335 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
434 |
Q |
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| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
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| Q |
435 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
534 |
Q |
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| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
35744458 |
T |
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| Q |
535 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
581 |
Q |
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| T |
35744457 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
35744411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 35744963 - 35744796
Alignment:
| Q |
20 |
tggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaagga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744963 |
tggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaagga |
35744864 |
T |
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| Q |
120 |
tgacaacaacatgcgtcaattgggtatgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
191 |
Q |
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| T |
35744863 |
tgacaacaacatgcgtcaattgggtatgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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