View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_low_5 (Length: 440)
Name: NF21056_low_5
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 47635261 - 47635685
Alignment:
| Q |
1 |
gatatgaattataccctttttatcgaaaccttgctccttcaccatcaccagcgccttcagcagcaccagcgcttgttcctccttcaaccagcactcctac |
100 |
Q |
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| T |
47635261 |
gatatgaattataccctttttatcgaaaccttgctccttcaccatcaccagcgccttcagcagcaccagcgcttgttcctccttcaaccagcactcctac |
47635360 |
T |
|
| Q |
101 |
tttgggaggtaatataatttacgtttgtgataattttgatgaattctgaattttataataactacttgttagggtcacaattatcgacctatttgactat |
200 |
Q |
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| T |
47635361 |
tttgggaggtaatataatttacgtttgtgataattttgatgaattctgaattttataataactacttgttagggtcacaattatcgatctatttgactat |
47635460 |
T |
|
| Q |
201 |
ttcacgtagatgcagaaaagtgtatgcataaaagagaataacaatgtactaaattgactttatcaattagtattaaatagaggcaacaactgtaaataac |
300 |
Q |
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| T |
47635461 |
ttcacgtagatgcagaaaagtgtatgcataaaagagaataacaatgtactaaattgactttatcaattagtattaaatagaggcaacaactgtaaataac |
47635560 |
T |
|
| Q |
301 |
cttaattaatgttgcattgaaaatcgaaggtattattacaattttaattttgcaggaactagcgggatctcatcagggacaattgttgcaattgtggttc |
400 |
Q |
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| T |
47635561 |
cttaattaatgttgcattgaaaatcgaaggtatcattacaattttaattttgcaggaagtagcgggatctcatcagggacaattgttgcaattgtggttc |
47635660 |
T |
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| Q |
401 |
cgatttctgtggccacgctgctatt |
425 |
Q |
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| T |
47635661 |
cgatttctgtggccacactgctatt |
47635685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9674614 - 9674581
Alignment:
| Q |
1 |
gatatgaattataccctttttatcgaaaccttgc |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9674614 |
gatatgaattataccctttttatcgaaaccttgc |
9674581 |
T |
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