View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_low_6 (Length: 418)
Name: NF21056_low_6
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 11184522 - 11184876
Alignment:
| Q |
8 |
tgataagaatgtcattgaaggttagtgcttagaaaagagaaaaggatcactgaaaaagagaaaagtaccaactattcttctgaacaaaggtgcaaacttc |
107 |
Q |
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| T |
11184522 |
tgataagaatgtcattgaaggttagtgcttagaaaagagaaaag-atctctgaaaaagagaaaagtaccaactattcttctgaacaaaggtgcaaacttc |
11184620 |
T |
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| Q |
108 |
aataaatcagtttcgtttttatattggtaccaaccattctatgctaaagcaatttgattgatttgcaaagggagcatgctatttctgaatgtttacttct |
207 |
Q |
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| T |
11184621 |
aataaatcagtttcgtttttatattggtaccaactatcctatgctaaagcaatttgattgatttgcaaagggagcatgctatttctgaatgtttacttct |
11184720 |
T |
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| Q |
208 |
tatgtaccatactttacaatgaaggaaaaggacacagtaactcacctgcatatacaacataaagacatgatgagtcaatgtatatgttcagtatagaatt |
307 |
Q |
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| T |
11184721 |
tatgtaccatactttacaatgaaggaaaaggacacagtaactcacctgcatatacaacataaagacatgatgagtcaatgtatatgttcagtatagaatt |
11184820 |
T |
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| Q |
308 |
gcacgtgttttccttttccagtctacaccatattgattggtcatcaatcctttgaa |
363 |
Q |
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| T |
11184821 |
gcacgtgttttccttttccagtctacaccatattgattggtcatcaatcctttgaa |
11184876 |
T |
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