View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21056_low_7 (Length: 346)
Name: NF21056_low_7
Description: NF21056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21056_low_7 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 13172 - 13008
Alignment:
| Q |
19 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13172 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatatgtgggaaaatgat |
13073 |
T |
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| Q |
119 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
183 |
Q |
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| T |
13072 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
13008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 12603768 - 12603932
Alignment:
| Q |
19 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgat |
118 |
Q |
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| T |
12603768 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatatgtgggaaaatgat |
12603867 |
T |
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| Q |
119 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603868 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
12603932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 23261866 - 23261701
Alignment:
| Q |
21 |
ttttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatg |
116 |
Q |
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| T |
23261866 |
ttttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaatt |
23261768 |
T |
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| Q |
117 |
atttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
183 |
Q |
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||||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |
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| T |
23261767 |
atttacttataaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtc |
23261701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 10453336 - 10453172
Alignment:
| Q |
19 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10453336 |
cattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgat |
10453237 |
T |
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| Q |
119 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
183 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10453236 |
ttactaagaaaatgaagaaaatcaactgagcatggcacacattaatcttttcctctttggttgtc |
10453172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 56478083 - 56478246
Alignment:
| Q |
23 |
ttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgat |
118 |
Q |
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|||||||||||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
56478083 |
ttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaataat |
56478181 |
T |
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| Q |
119 |
ttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
183 |
Q |
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||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |
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| T |
56478182 |
ttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtc |
56478246 |
T |
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