View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21057_high_5 (Length: 250)
Name: NF21057_high_5
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1353978 - 1353743
Alignment:
| Q |
1 |
catttactctaaaatcaacttatatacccatggttaaatttggttgagccatagtatcttcccctatttctacaatctgagatgaaggg-tggttacatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1353978 |
catttactctaaaatcaacttatatacccatggttaaatttggttgagccatagtatcttcccctatttctacaatctgagatgaagggatggttacatt |
1353879 |
T |
|
| Q |
100 |
aaaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacaga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1353878 |
aaaatcgacttatgagacgcgcataggaagcctctggtgatccgtccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacaga |
1353779 |
T |
|
| Q |
200 |
caaacatgaatagctttagttacttaaagttgctat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1353778 |
caaacatgaatagctttagttacttaaagttgctat |
1353743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 1339387 - 1339157
Alignment:
| Q |
1 |
catttactctaaaatcaacttatatacccatggttaaatttggttgagccatagtatcttcccctatttctacaatctgagatgaagggtggttacatta |
100 |
Q |
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|||||||| |||| || ||||||||| || | ||||||||||||||||||||| ||| ||||| ||||||||| | ||| ||| |||| | ||||||| |
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| T |
1339387 |
catttactttaaactcgacttatatatcctttgttaaatttggttgagccatactattttccc-tatttctacgagctgtgattaaggatacttacattg |
1339289 |
T |
|
| Q |
101 |
aaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacagac |
200 |
Q |
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| T |
1339288 |
aaatccatgtatgaggcacgcatagaaagccattggtgatccatcagcttgaaagctatgcagtagagaagatcaaaagctgattcattttctgccagac |
1339189 |
T |
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| Q |
201 |
aaacatgaatagctttagttacttaaagttgc |
232 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| |
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| T |
1339188 |
aaacatgaatagatttagttattgaaagttgc |
1339157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 1362047 - 1361975
Alignment:
| Q |
3 |
tttactctaaaatcaacttatatacccatggttaaatttgg-ttgagccatagtatcttcccctatttctacaa |
75 |
Q |
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||||||||||| |||| |||||||||| ||||||||||||| || ||||||| |||||||| |||||||||||| |
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| T |
1362047 |
tttactctaaactcaaattatatacccttggttaaatttggtttaagccata-tatcttccgctatttctacaa |
1361975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 1344859 - 1344817
Alignment:
| Q |
175 |
aaaagcttattcagtttataacagacaaacatgaatagcttta |
217 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||||||| |
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|
| T |
1344859 |
aaaagcttattcagtttctaactgacaaacctgaatagcttta |
1344817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1535887 - 1535925
Alignment:
| Q |
1 |
catttactctaaaatcaacttatatacccatggttaaat |
39 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
1535887 |
catttactctaaactcaacttatatacccttggttaaat |
1535925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29051517 - 29051735
Alignment:
| Q |
1 |
catttactctaaaatcaacttatatacccatggttaaatttggttgagccatagtatcttcccctatttctacaatctgagatgaaggg-tggttacatt |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| | ||||||| |
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| T |
29051517 |
catttactctaaactcaacttatatacccttgtttaaatttggttgagccataatatcttcccctatttctacaagctgagattcagggataattacatt |
29051616 |
T |
|
| Q |
100 |
aaaatcgacttatgagacgcgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacaga |
199 |
Q |
| |
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||||||||| |||||| | |||||| ||||| ||||||||| || ||||||| ||||| ||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
29051617 |
aaaatcgacgtatgaggcatgcatagaaagccattggtgatccatcagcttaaaagctatgtagtagagaagatcgaaagcttattcagtttcaaacag- |
29051715 |
T |
|
| Q |
200 |
caaacatgaatagctttagtt |
220 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
29051716 |
-aaacatgaattgctttagtt |
29051735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 13591432 - 13591320
Alignment:
| Q |
119 |
cgcataggaagcctctggtgatccttccgcttaaatgctatacagtagtgaagatcaaaagcttattcagtttataacagacaaacatgaatagctttag |
218 |
Q |
| |
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||||||| ||||| ||||||| | || |||| |||||||| |||||| ||| |||||||| | ||||| ||| | ||||||| |||||||||||||| |
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| T |
13591432 |
cgcatagaaagccattggtgattcatcagcttgaatgctatgcagtagagaacatcaaaagttgattcattttctgt-agacaaaaatgaatagctttag |
13591334 |
T |
|
| Q |
219 |
ttacttaaagttgc |
232 |
Q |
| |
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||||| |||||||| |
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|
| T |
13591333 |
ttactaaaagttgc |
13591320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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