View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21057_high_6 (Length: 241)

Name: NF21057_high_6
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21057_high_6
NF21057_high_6
[»] chr5 (2 HSPs)
chr5 (13-241)||(13085186-13085405)
chr5 (13-204)||(13013846-13014028)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 13085405 - 13085186
Alignment:
Q  13 tcatatataaggtcccttcgcgtcagaattttttcaatcgttaggttatagttgattcatatagtgttggtgtgggatatgtggaaagggttggagccgg 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||    
T  13085405 tcatatataaggtcccttcgcgtcataattttttcaatcgttaggttatagttaat---------gttggtgtgggatatgtggaaagggttggagccgg 13085315  T
Q  113 tggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggttgggagtgggtcttgtcaggtaatttggtggtg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13085314 tggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggttgggagtgggtcttgtcaggtaatttggtggtg 13085215  T
Q  213 ttgtttcaggtgtttgtattcttaaaggc 241  Q
    |||||||||||||||||||||||||||||    
T  13085214 ttgtttcaggtgtttgtattcttaaaggc 13085186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 13014028 - 13013846
Alignment:
Q  13 tcatatataaggtcccttcgcgtcagaattttttcaatcgttaggttatagttgattcatatagtgttggtgtgggatatgtggaaagggttggagccgg 112  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  13014028 tcatatataaggtcccttcgcgtcataattttttcaattgttaggttatagtt---------agtgttggtgtgggatatgtggaaagggttggagccgg 13013938  T
Q  113 tggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggttgggagtgggtcttgtcaggtaatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13013937 tggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggttgggagtgggtcttgtcaggtaatt 13013846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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