View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21057_high_9 (Length: 204)
Name: NF21057_high_9
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 33382114 - 33382223
Alignment:
| Q |
19 |
actcaggttccaacaattggatagaaagtgtcatggaattgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtt |
118 |
Q |
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| T |
33382114 |
actcaggttccaacaattggataaaaagtgtcatggaattgaacttgtatatatgctccaag---ttataaatttaatgcttcaataaggagctat--tt |
33382208 |
T |
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| Q |
119 |
tgtttccaattgtat |
133 |
Q |
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| T |
33382209 |
tctttccaattgtat |
33382223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 33400378 - 33400417
Alignment:
| Q |
23 |
aggttccaacaattggatagaaagtgtcatggaattgaac |
62 |
Q |
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| T |
33400378 |
aggttccaacaattggatagaaagtgtcatggaattgaac |
33400417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 33356656 - 33356737
Alignment:
| Q |
49 |
tcatggaattgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtttgtttccaattgtat |
133 |
Q |
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| T |
33356656 |
tcatggaatttaacttgtatacatgctccaagttat---aaatttaatgtttcaataaggagctatagtttctttccaattgtat |
33356737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 39306945 - 39306839
Alignment:
| Q |
21 |
tcaggttccaacaattggatagaaagtgtcatggaattgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtttg |
120 |
Q |
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| T |
39306945 |
tcaggttccgataattggatagaaagtgtcatggaattgaacttgaatatatgctccaag---ttataaatttaaggtttcaataaggagc--tggttta |
39306851 |
T |
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| Q |
121 |
tttccaattgta |
132 |
Q |
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| T |
39306850 |
tttccaattgta |
39306839 |
T |
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