View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21057_low_1 (Length: 615)

Name: NF21057_low_1
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21057_low_1
NF21057_low_1
[»] chr2 (5 HSPs)
chr2 (60-224)||(8019349-8019513)
chr2 (467-590)||(8019760-8019883)
chr2 (336-453)||(8019528-8019645)
chr2 (17-66)||(8019276-8019325)
chr2 (467-566)||(22391113-22391209)
[»] chr3 (27 HSPs)
chr3 (381-450)||(28183439-28183508)
chr3 (307-453)||(17746683-17746838)
chr3 (307-453)||(19048003-19048158)
chr3 (404-453)||(28081438-28081487)
chr3 (381-453)||(28147234-28147307)
chr3 (502-566)||(28081765-28081826)
chr3 (466-565)||(27918358-27918454)
chr3 (388-453)||(27974226-27974291)
chr3 (496-566)||(18026641-18026708)
chr3 (493-566)||(28147744-28147814)
chr3 (494-566)||(28131961-28132030)
chr3 (493-566)||(17746344-17746414)
chr3 (493-566)||(19047664-19047734)
chr3 (502-559)||(26180769-26180823)
chr3 (493-566)||(27461214-27461284)
chr3 (493-566)||(27975362-27975432)
chr3 (318-365)||(28001872-28001919)
chr3 (390-437)||(28482365-28482412)
chr3 (390-437)||(28511177-28511224)
chr3 (404-450)||(27918067-27918113)
chr3 (502-557)||(26210262-26210314)
chr3 (502-557)||(26237506-26237558)
chr3 (412-453)||(28053208-28053249)
chr3 (412-453)||(28063633-28063674)
chr3 (496-566)||(11418747-11418814)
chr3 (409-453)||(18026977-18027021)
chr3 (409-453)||(27392719-27392763)
[»] scaffold0257 (1 HSPs)
scaffold0257 (381-433)||(17021-17073)
[»] chr7 (1 HSPs)
chr7 (467-557)||(8693519-8693606)
[»] scaffold0043 (1 HSPs)
scaffold0043 (472-557)||(54907-54989)
[»] chr6 (1 HSPs)
chr6 (217-272)||(12217255-12217309)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 5e-76; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 8019349 - 8019513
Alignment:
Q  60 catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaagtttcgacaacactttgtgcatataccagaccagtgatatca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |    
T  8019349 catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaactttcgacaacactttgtgcatatgccagactagtgatatta 8019448  T
Q  160 gcctaaaatcatacaattgttaaggactaacaactttcataatcatatgcaattagttaaaacct 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8019449 gcctaaaatcatacaatcgttaaggactaacaactttcataatcatatgcaattagttaaaacct 8019513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 467 - 590
Target Start/End: Original strand, 8019760 - 8019883
Alignment:
Q  467 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019760 taagatgtctacctcacttacttaagatgagaatcaaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 8019859  T
Q  567 aacatgctttccaaagctaggaac 590  Q
    ||||||||||||||||||||||||    
T  8019860 aacatgctttccaaagctaggaac 8019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 8019528 - 8019645
Alignment:
Q  336 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccattcatttattgcagga 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8019528 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccatttatttattgcagga 8019627  T
Q  436 attgagggggaatgtgga 453  Q
    ||||||| ||||||||||    
T  8019628 attgaggaggaatgtgga 8019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 8019276 - 8019325
Alignment:
Q  17 catcttctccataagactacgaaattcattttggacatgaccacatccaa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019276 catcttctccataagactacgaaattcattttggacatgaccacatccaa 8019325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 467 - 566
Target Start/End: Original strand, 22391113 - 22391209
Alignment:
Q  467 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||| |||||||| || || ||| | |||||||| |||||||||||||| || ||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  22391113 taaggtgtctaccacagttgcttgatatgagaattgaagaatgcaaagaattgaagcatattattga---agatgatttggagaataaaaaatcctcaaa 22391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 28183439 - 28183508
Alignment:
Q  381 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgt 450  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28183439 actttgttattcttattttatgcatgtgtttatttcccattcatttattgcaggaattgagtgggaatgt 28183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 453
Target Start/End: Complemental strand, 17746838 - 17746683
Alignment:
Q  307 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 397  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  17746838 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 17746739  T
Q  398 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  17746738 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 17746683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 307 - 453
Target Start/End: Complemental strand, 19048158 - 19048003
Alignment:
Q  307 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 397  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  19048158 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 19048059  T
Q  398 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  19048058 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 19048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 28081438 - 28081487
Alignment:
Q  404 atgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28081438 atgtgtttatttcccattcatttattgcaggaattgagtgggaatgtgga 28081487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 28147234 - 28147307
Alignment:
Q  381 acttggttattcttatcatatgcat-gtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28147234 actttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgga 28147307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 28081765 - 28081826
Alignment:
Q  502 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  28081765 gaagaatgcaaagagttaaagcatattattga---agatgatttggagaataaaaaatcctcaaa 28081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 27918358 - 27918454
Alignment:
Q  466 ttaagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaa 565  Q
    ||||||||||| || || || ||| | || ||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||||||||||    
T  27918358 ttaagatgtctgccgcagttgcttcatataagaattgaagaatgcaaagagttgaagtatattattga---agatgatttggagaataaaaaatcctcaa 27918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 27974226 - 27974291
Alignment:
Q  388 tattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    |||||||||  |||||||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtgga 27974291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 566
Target Start/End: Complemental strand, 18026708 - 18026641
Alignment:
Q  496 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    ||||| ||||| ||||||||||| ||| |||||||||||   |||||||||||| ||||||||||||||||    
T  18026708 agaattgaagattgcaaagagttgaagcatattattgaa---gatgatttggagaataaaaaatcctcaaa 18026641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 566
Target Start/End: Original strand, 28147744 - 28147814
Alignment:
Q  493 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||||||| ||||||||||| ||||| | | |||||||||||   |||||||||||| ||||||||||||||||    
T  28147744 atgagaattgaagaatgcaatgagttgaggcatattattgaa---gatgatttggagaataaaaaatcctcaaa 28147814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 566
Target Start/End: Original strand, 28131961 - 28132030
Alignment:
Q  494 tgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    ||||||| |||||||||||||| || ||| |||| ||||||   |||||||||||| ||||||||||||||||    
T  28131961 tgagaattgaagaatgcaaagaattgaagcatataattgaa---gatgatttggagaataaaaaatcctcaaa 28132030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 17746414 - 17746344
Alignment:
Q  493 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  17746414 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 17746344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 19047734 - 19047664
Alignment:
Q  493 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  19047734 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 19047664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 26180823 - 26180769
Alignment:
Q  502 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaat 559  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaaat 26180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 566
Target Start/End: Complemental strand, 27461284 - 27461214
Alignment:
Q  493 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||   ||||||||||| | ||||| ||||||||    
T  27461284 atgagaattgaagaatgcaaagagttgaagcatataattgaat---atgatttggagaacaaaaactcctcaaa 27461214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 566
Target Start/End: Original strand, 27975362 - 27975432
Alignment:
Q  493 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||   ||||||||||| ||| ||||||||||||    
T  27975362 atgagaattgaagagtgcaaagagttgaagcatataattgaat---atgatttggagaatagaaaatcctcaaa 27975432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 28001872 - 28001919
Alignment:
Q  318 gtgagtttgaataaacactctagtatatcaaatatctcaacaaccttt 365  Q
    ||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  28001872 gtgagtttgaatcgacactctagtatattaaatatctccacaaccttt 28001919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 28482412 - 28482365
Alignment:
Q  390 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 437  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28482412 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28482365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 28511224 - 28511177
Alignment:
Q  390 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 437  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28511224 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28511177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 27918067 - 27918113
Alignment:
Q  404 atgtgtttatttcccattcatttattgcaggaattgagggggaatgt 450  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  27918067 atgtgtttatttcccattcgtttattacaggatttgagtgggaatgt 27918113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 26210314 - 26210262
Alignment:
Q  502 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 557  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 26237558 - 26237506
Alignment:
Q  502 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 557  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 28053208 - 28053249
Alignment:
Q  412 atttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtgga 28053249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  412 atttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtgga 28063674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 566
Target Start/End: Original strand, 11418747 - 11418814
Alignment:
Q  496 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 566  Q
    ||||| ||||||||||||||||| ||| |||| |||||   |||||| |||||| ||||||| ||||||||    
T  11418747 agaattgaagaatgcaaagagttgaagcatatgattga---agatgacttggagaataaaaattcctcaaa 11418814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 18027021 - 18026977
Alignment:
Q  409 tttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtgga 18026977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 27392763 - 27392719
Alignment:
Q  409 tttatttcccattcatttattgcaggaattgagggggaatgtgga 453  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtgga 27392719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 17021 - 17073
Alignment:
Q  381 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcag 433  Q
    |||| |||||||||||  ||| |||||||||||||||||||||||||||||||    
T  17021 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 17073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 557
Target Start/End: Complemental strand, 8693606 - 8693519
Alignment:
Q  467 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 557  Q
    |||| |||||||| || || ||| | |||||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||    
T  8693606 taaggtgtctaccacagttgctttatatgagaattgaagaatgcaaagagttgaagcatattattga---agatgatttggagaataaaaa 8693519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 54989 - 54907
Alignment:
Q  472 tgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 557  Q
    ||||||||||| || ||| | || ||||| ||||||||||||||||| ||| |||| |||||   ||||||||||||| |||||||    
T  54989 tgtctacctcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatgattga---agatgatttggagaataaaaa 54907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 12217309 - 12217255
Alignment:
Q  217 taaaacctattacagttagttaaaactaactacctggatagtttgtggaacaagtt 272  Q
    |||||||||||||||||||||| ||||||||| || ||||  ||||||||||||||    
T  12217309 taaaacctattacagttagttacaactaacta-ctagataacttgtggaacaagtt 12217255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University