View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21057_low_12 (Length: 203)

Name: NF21057_low_12
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21057_low_12
NF21057_low_12
[»] chr7 (5 HSPs)
chr7 (14-187)||(42133060-42133233)
chr7 (19-179)||(42154012-42154172)
chr7 (19-179)||(42142209-42142369)
chr7 (19-179)||(42171858-42172018)
chr7 (110-182)||(39622216-39622288)
[»] chr8 (3 HSPs)
chr8 (93-187)||(45156073-45156166)
chr8 (22-187)||(4501190-4501355)
chr8 (18-112)||(43529435-43529529)
[»] chr1 (4 HSPs)
chr1 (19-171)||(41687689-41687841)
chr1 (58-182)||(2160938-2161062)
chr1 (18-179)||(19542600-19542761)
chr1 (104-182)||(2149001-2149079)
[»] chr4 (1 HSPs)
chr4 (19-149)||(2886962-2887092)
[»] chr2 (1 HSPs)
chr2 (105-182)||(43457685-43457762)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 42133060 - 42133233
Alignment:
Q  14 catagggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133060 catagggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaat 42133159  T
Q  114 atatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133160 atatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtg 42133233  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 42154012 - 42154172
Alignment:
Q  19 ggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatc 118  Q
    ||||||||||| ||||| || || || ||||| || | |||||| ||||||| |||||||||| ||||||| || ||||| ||| |||||||||| ||||    
T  42154012 ggagaatgaatgtcattctgttcgcagtaaccgcttattcgagcgaatgttgcttggttctttcggtaaccggatatgttgatatttccttcaatgtatc 42154111  T
Q  119 cacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacc 179  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  42154112 cacctgtttttctgccggctaatacatccatgagggttgtctttccagcaccactaacacc 42154172  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 42142209 - 42142369
Alignment:
Q  19 ggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatc 118  Q
    ||||||||||| ||||| || || || ||||| || | |||||| ||||||  ||||||||||||||||||||| ||| | ||| ||||||| || ||||    
T  42142209 ggagaatgaatgtcattctgttcgcagtaaccgcttattcgagcgaatgtttcttggttctttgggtaaccagatatgctgatatttccttcgatgtatc 42142308  T
Q  119 cacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacc 179  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  42142309 cacctgtctttcttccagctaatacatccattagggttgtctttccagcaccactaacacc 42142369  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 42171858 - 42172018
Alignment:
Q  19 ggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatc 118  Q
    ||||||||||||||||| || || || |||||||| | ||| || ||||||  |||||||||| ||||||| || ||| ||||| |||||||||| ||||    
T  42171858 ggagaatgaatatcattctgttcgcagtaaccactaattcgggcgaatgtttcttggttcttttggtaacctgatatgctaatatttccttcaatgtatc 42171957  T
Q  119 cacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacc 179  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||    
T  42171958 caccagtttttcttccagctaatacatccatgagtgttgtcttcccagcaccactaacacc 42172018  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 39622216 - 39622288
Alignment:
Q  110 caatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccat 182  Q
    |||||||||| |  ||||||||||| |||| ||||||||| || ||||| || ||||||||| | ||||||||    
T  39622216 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccat 39622288  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 45156073 - 45156166
Alignment:
Q  93 gatgttaatacttc-cttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtg 187  Q
    |||||||||||||  ||||||| ||||||||||||||||  |  ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  45156073 gatgttaatactttgcttcaatgtatccacctgtttttcgacaagctaatacatccatgagggttgtctttccagcac--ctgacacccataagtg 45156166  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 4501355 - 4501190
Alignment:
Q  22 gaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatccac 121  Q
    |||||||||||| |||| ||||||||||||   ||||  ||||| |||  ||||||||| ||||| ||||||||  ||| |  ||||||||| || ||||    
T  4501355 gaatgaatatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttcttagggtatccagagattctaacatctccttcaatgtagccac 4501256  T
Q  122 ctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtg 187  Q
    | || |||||||| ||||| |||||||| |  |||||||| || |||||||| || ||||| ||||    
T  4501255 cagtctttcttcctgctaaaacatccattaaagttgtcttcccggcaccactaactcccattagtg 4501190  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 43529529 - 43529435
Alignment:
Q  18 gggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaa 112  Q
    |||||| || ||||||||||| ||||||||||| || |  |||||||| |||| ||||||||| || ||||| || ||| |||||||||||||||    
T  43529529 gggagagtggatatcattttgttcacaataaccgctaatccgagcaaaagttgcttggttcttaggataacctgatatgctaatacttccttcaa 43529435  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 41687689 - 41687841
Alignment:
Q  19 ggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatc 118  Q
    ||||| |||||||| ||||| ||||| || ||||||| ||| ||||| |||| |||||||||||| |||||||| | | |||| || ||||||||||| |    
T  41687689 ggagagtgaatatcgttttgttcacagtatccactgattcgtgcaaaagttgcttggttctttggataaccagatacgctaatgctcccttcaatataac 41687788  T
Q  119 cacctgtttttcttccggctaatacatccatgagggttgtctttccagcacca 171  Q
    |||| ||||||||||| || |  |||||||| || || || ||||||||||||    
T  41687789 caccagtttttcttccagcaagaacatccattagtgtggtttttccagcacca 41687841  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 2160938 - 2161062
Alignment:
Q  58 cgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttg 157  Q
    |||||||||||| |||| |||||||| || || || ||  | ||  |||| |||||||||||||| ||||| ||||| ||||| |||||||| || || |    
T  2160938 cgagcaaatgttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtag 2161037  T
Q  158 tctttccagcaccactgacacccat 182  Q
    ||||||| |||||||| ||||||||    
T  2161038 tctttccggcaccacttacacccat 2161062  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 19542761 - 19542600
Alignment:
Q  18 gggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatat 117  Q
    |||||| || ||||||||||| ||||||||||| || |  |||||||| |||| ||||||||| || ||||| || ||| | |||||||||||||| ||     
T  19542761 gggagagtggatatcattttgttcacaataaccgctaatccgagcaaaagttgcttggttcttaggataacccgatatgctgatacttccttcaatgtaa 19542662  T
Q  118 ccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacc 179  Q
    ||||  ||||| ||||| |  |  |||||||| |  || || |||||||||||||| |||||    
T  19542661 ccactagttttccttcctgaaagcacatccatcaaagtggtttttccagcaccacttacacc 19542600  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 2149001 - 2149079
Alignment:
Q  104 ttccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccat 182  Q
    |||||||||| |||||||  |||||| |||| ||||| |||||||| |  || ||||||||||||||||| ||||||||    
T  2149001 ttccttcaatgtatccactagtttttattccagctaaaacatccattaaagtagtctttccagcaccacttacacccat 2149079  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 2887092 - 2886962
Alignment:
Q  19 ggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaatacttccttcaatatatc 118  Q
    |||||||| |||||||| |||||||||||||||  || ||||||||| |||  ||| || || ||||| ||||| || || || || || |||||||| |    
T  2887092 ggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataac 2886993  T
Q  119 cacctgtttttcttccggctaatacatccat 149  Q
    |||| ||||| || || || || ||||||||    
T  2886992 caccagttttcctaccagccaaaacatccat 2886962  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 43457685 - 43457762
Alignment:
Q  105 tccttcaatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccat 182  Q
    ||||||||| || |||||||| || ||||| ||||| |||||||| |  |||||||||||||| ||||| || |||||    
T  43457685 tccttcaatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccat 43457762  T

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