View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21057_low_2 (Length: 462)
Name: NF21057_low_2
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 180 - 451
Target Start/End: Original strand, 43456346 - 43456614
Alignment:
| Q |
180 |
ctattattgtgtaaaaaagttggtaggtttgtttcatgggttttgacatgttatgtaaattactataggaaacattatcttgtcaactgcctttgagttt |
279 |
Q |
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| T |
43456346 |
ctattattgtgtaaaaaagttggtaggtttgtttcatgggttttgacatgttatgtaaattactataggaaacattatcttgtcaactgcctttgagttt |
43456445 |
T |
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| Q |
280 |
cgacttgttggtgacatctaaatttaagctacattagaatttatggatcggagatggtaccgtacaagaagcttttcaagtattacttgactgcttccca |
379 |
Q |
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| T |
43456446 |
cgacttg---gtgacatctaaatttaagctacattagaatttatggattggagatggtaccgtacaagaagcttttcaagtattacttgactgcttccca |
43456542 |
T |
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| Q |
380 |
tacttaatacttaattaatcaagaaacatttctatctagatttttcttttagtaattcaattccatgttcat |
451 |
Q |
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| T |
43456543 |
tacttaatacttaattaatcaagaaacatttctatctagatttttcttttagtaattcaattccatgttcat |
43456614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 43456221 - 43456350
Alignment:
| Q |
19 |
agggaagacaaagacactatcaatatgttaggaagacaggcactatcagtaatagtgatgtaaagtgtagctctaggtttaacattgaatttttcttcct |
118 |
Q |
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| T |
43456221 |
agggaagacaaagacactatcaatatgttaggaagacaggcactatcagtaatagtgatgtaaagtgtaactctaggtttaacattgaatttttcttcct |
43456320 |
T |
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| Q |
119 |
ttagaaaattaattaacaatcttgactatt |
148 |
Q |
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| T |
43456321 |
ttagaaaattaattaacaatcttgactatt |
43456350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 43464452 - 43464741
Alignment:
| Q |
28 |
aaagacactatcaatatgttaggaagacaggcactatcagtaatagtgatgtaaagtgtagctctaggtttaacattgaatttttcttcctttagaaaat |
127 |
Q |
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| T |
43464452 |
aaagacactgtcaatatgttaggaagacagacactatcagtagtagtggggtaaagtgtagcgctaactttaacattgaatttttcttcctttggaaaat |
43464551 |
T |
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| Q |
128 |
taattaacaatcttgactattgtttctcttnnnnnnnnngcttagtcattagctattattgtgtaaaaaagttggtaggtttgtttcatgggttttgaca |
227 |
Q |
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| T |
43464552 |
t-atatacaatcttgaattttgtttctctt-taaaaaaagcttagtcattagctattattatgt-aaaaagttgatatgtctacttcatagattttccct |
43464648 |
T |
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| Q |
228 |
tgttatgtaaattactataggaaacattatcttgtcaactgcc-tttgagtttcgacttgttggtgacatctaaatttaagctacattagaatttatg |
324 |
Q |
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| T |
43464649 |
tgttatgtaaactac--taggaaacatcatcttggcaattgccttttgaatttcgac---ttggtgacatctaaatttaagctacattagaatatatg |
43464741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 43464772 - 43464858
Alignment:
| Q |
321 |
tatggatcggagatggtaccgtacaagaagcttttcaagtattacttgactgcttcccatacttaatac-ttaattaatcaagaaac |
406 |
Q |
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| T |
43464772 |
tatggattcgaggtggtaccgtacacgaagcttttcaaatgttacttgacttcttcacatgcttaatactttaattaatcgagaaac |
43464858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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