View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21057_low_3 (Length: 439)
Name: NF21057_low_3
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 26614824 - 26614416
Alignment:
| Q |
11 |
catcatcatagaaattgtcaccagttgaaactacaaaatcaatgtcaagcttctctccaaccactcccatctgcaatcaaataaatttcattttgtaagt |
110 |
Q |
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| T |
26614824 |
catcatcatagaaattgtcaccagttgaaactacaaaatcaatgtcaagcttctctccaaccactcccatctgcaatcaaataaatttcattttgtaagt |
26614725 |
T |
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| Q |
111 |
ttttattttgtacaaaaagtgcttatgattatgaatgaatgaatgatcataacttataaaaatagcttatacgacaacaacttatttaatactcccctgt |
210 |
Q |
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| T |
26614724 |
ttttattttgtacaaaaagtgcttatgatt-tgaatgaatgaatgatcataacttataaaaatagcttatacgacaacaacttatttaatactcccccgt |
26614626 |
T |
|
| Q |
211 |
ataaaatatacgcnnnnnnngtacatgtatctgatcaaaattttagaccagatacacgtagtttcatttttgcttatattttgttactttgtttatatgc |
310 |
Q |
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| T |
26614625 |
ataaaatatacgcaaaaaaagtacatgtatctgatcaaaagtttagaccagatacacgtagtttcatttttgcttatattttgttactttgtttatatgc |
26614526 |
T |
|
| Q |
311 |
tcgaatgaaactcgcaatttaattttgatacacacatataaattaaatcaaagataagaag--nnnnnnnnttaatcgaacctgtaaagcaacctcggat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26614525 |
tcgaatgaaactcgcaatttaattttgatacacacatataaattaaatcaaagataagaagaagaaaaaaattaatcgaacctggaaagcaacctcggat |
26614426 |
T |
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| Q |
409 |
tgattgtatt |
418 |
Q |
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| T |
26614425 |
tgattgtatt |
26614416 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 39897196 - 39897164
Alignment:
| Q |
234 |
catgtatctgatcaaaattttagaccagataca |
266 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
39897196 |
catgtatctgatcaatattttagaccagataca |
39897164 |
T |
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