View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21057_low_4 (Length: 422)
Name: NF21057_low_4
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 8431664 - 8432006
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgttttgatgatgtggt |
118 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||| || |||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||| | |
|
|
| T |
8431664 |
gatacagcttctaaaactg--tagagttgaattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatatttctgttttgttgatgtgtt |
8431761 |
T |
|
| Q |
119 |
cattgttttgtagttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8431762 |
cattgttttgtagttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcatt |
8431861 |
T |
|
| Q |
219 |
aattactctctttgtagatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaaggtgttt |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8431862 |
aattactctctttgaagatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaagatgttt |
8431961 |
T |
|
| Q |
319 |
gctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8431962 |
gctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
8432006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 118 - 363
Target Start/End: Original strand, 8406680 - 8406925
Alignment:
| Q |
118 |
tcattgttttgtagttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8406680 |
tcattgttttgtagttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgt |
8406779 |
T |
|
| Q |
218 |
taattactctctttgtagatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaaggtgtt |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406780 |
taattactctctttgaagatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaaggtgtt |
8406879 |
T |
|
| Q |
318 |
tgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406880 |
tgctttgtgttaatttaggatagtgtatagttggggaaataaaaag |
8406925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 8412639 - 8412724
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8412639 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8412724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 8434737 - 8434822
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8434737 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8434822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 8412773 - 8412954
Alignment:
| Q |
132 |
ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt |
231 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| ||||||||| |||| |||| ||||||||||||| ||||| |
|
|
| T |
8412773 |
ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaattactttcttt |
8412872 |
T |
|
| Q |
232 |
gta---gatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaagg |
313 |
Q |
| |
|
| | |||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8412873 |
gaagatgatgataaagaacaagaaattggaactgaagtttgtaata---aagccatgatatatatgaattaatattatttgaagg |
8412954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 8434871 - 8435052
Alignment:
| Q |
132 |
ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt |
231 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| ||||||||| |||| |||| ||||||||||||| ||||| |
|
|
| T |
8434871 |
ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaattactttcttt |
8434970 |
T |
|
| Q |
232 |
gta---gatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaagg |
313 |
Q |
| |
|
| | |||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8434971 |
gaagatgatgataaagaacaagaaattggaactgaagtttgtaata---aagccatgatatatatgaattaatattatttgaagg |
8435052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 8394810 - 8394725
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8394810 |
gatacagcttccaagactgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 292
Target Start/End: Complemental strand, 8394676 - 8394516
Alignment:
| Q |
132 |
ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt |
231 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| ||||||||| |||| |||| |||||| |||||||| ||| |
|
|
| T |
8394676 |
ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctattt |
8394577 |
T |
|
| Q |
232 |
gta---gatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatata |
292 |
Q |
| |
|
| | || ||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
8394576 |
gaagacgacgataaagaacaagaaagtagaactgaagtttg---tattgaagacatgatatata |
8394516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 8395053 - 8395012
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcatta |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395053 |
gatacagcttccaagactgcatagagttgaactgtagcatta |
8395012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8406519 - 8406560
Alignment:
| Q |
19 |
gatacagcttccaagactgcatagagttgaactgtagcatta |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406519 |
gatacagcttccaagactgcatagagttgaactgtagcatta |
8406560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University