View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21057_low_5 (Length: 394)

Name: NF21057_low_5
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21057_low_5
NF21057_low_5
[»] chr2 (4 HSPs)
chr2 (1-386)||(44223074-44223459)
chr2 (1-386)||(44233896-44234281)
chr2 (45-386)||(44210956-44211297)
chr2 (124-330)||(43457590-43457796)
[»] chr4 (3 HSPs)
chr4 (48-386)||(2877072-2877410)
chr4 (52-359)||(2886866-2887173)
chr4 (48-386)||(2897199-2897537)
[»] chr7 (10 HSPs)
chr7 (91-347)||(39547487-39547743)
chr7 (115-353)||(39365925-39366163)
chr7 (91-353)||(39338572-39338834)
chr7 (106-362)||(39353406-39353662)
chr7 (91-347)||(39564266-39564522)
chr7 (79-320)||(39589303-39589544)
chr7 (91-347)||(39575077-39575333)
chr7 (91-347)||(39538029-39538285)
chr7 (91-344)||(39622083-39622336)
chr7 (91-193)||(1084823-1084925)
[»] chr1 (2 HSPs)
chr1 (82-347)||(2160848-2161113)
chr1 (205-347)||(2148988-2149130)
[»] chr3 (2 HSPs)
chr3 (115-311)||(49773102-49773298)
chr3 (168-288)||(25523303-25523423)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 44223074 - 44223459
Alignment:
Q  1 aaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223074 aaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccg 44223173  T
Q  101 aataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggta 200  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223174 aataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggta 44223273  T
Q  201 cccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaa 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223274 cccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaa 44223373  T
Q  301 gctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttc 386  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44223374 gctgtgagaacaccgggcctgaatgcaccactaacacccttcaaaagcactaatctgtcttctctaacaccttgctccttcatttc 44223459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 44233896 - 44234281
Alignment:
Q  1 aaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccg 100  Q
    ||||| ||| || |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44233896 aaggtaaacgaaggtaaacaaagccacgccgaataaaccatgtactaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgctg 44233995  T
Q  101 aataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggta 200  Q
    | |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||    
T  44233996 agtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgctttttaggata 44234095  T
Q  201 cccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaa 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44234096 cccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaa 44234195  T
Q  301 gctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaagcactaatctatcttctctaacaccttgctccttcatttc 386  Q
    || || || || || ||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  44234196 gccgtaagtacaccaggcctgaatgcgccactaacacccttcaaaagcactaatctgtcctctgtaacaccttgctccttcatttc 44234281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 45 - 386
Target Start/End: Original strand, 44210956 - 44211297
Alignment:
Q  45 ctaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggata 144  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||| | ||| |||||||| |||||||| |||||||| |||    
T  44210956 ctaactaacctttctagtattggaatcaactccagaaggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaata 44211055  T
Q  145 tcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcc 244  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44211056 tcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcc 44211155  T
Q  245 tcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaa 344  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  44211156 taccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccgctaacacccttcaa 44211255  T
Q  345 aagcactaatctatcttctctaacaccttgctccttcatttc 386  Q
    |||||||| ||| || ||| ||||||||||||||||||||||    
T  44211256 aagcactagtctgtcctctgtaacaccttgctccttcatttc 44211297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 330
Target Start/End: Original strand, 43457590 - 43457796
Alignment:
Q  124 gtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccat 223  Q
    ||||| || ||||||||||||||  | || || ||||| ||||||||||| |||||||||||||| || |||||| | ||||| |   | |  ||||| |    
T  43457590 gtaacttgtggtgaatggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattcttagggaagccagagattctaacatctcctt 43457689  T
Q  224 caatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaa 323  Q
    |||| || |||||||| ||||| ||||| | ||||||||||| |||||| || ||||||||||| || ||||| ||||| || ||||| || ||||||||    
T  43457690 caatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaa 43457789  T
Q  324 tgcacca 330  Q
    |||||||    
T  43457790 tgcacca 43457796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 48 - 386
Target Start/End: Complemental strand, 2877410 - 2877072
Alignment:
Q  48 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatca 147  Q
    ||||||||||||||| |||||||||||| |||  |||||||||||||| || ||||| || ||||||||||| || ||||| || || || |||||||||    
T  2877410 actaacctttctggtattggaatcaacttctgccggtaaacgaagccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatca 2877311  T
Q  148 ttctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcc 247  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |  || |||   ||||||||||| ||||  |||||||| |    
T  2877310 ttctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctac 2877211  T
Q  248 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    ||||||  |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||| |||||||||||    
T  2877210 cagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcccttcaaaag 2877111  T
Q  348 cactaatctatcttctctaacaccttgctccttcatttc 386  Q
    |||||  ||||| ||| | |||||||| || ||||||||    
T  2877110 cactagcctatcctctatcacaccttgatctttcatttc 2877072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 52 - 359
Target Start/End: Complemental strand, 2887173 - 2886866
Alignment:
Q  52 acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattct 151  Q
    ||||||||||| || ||||||||  |||  |||||||||||||| ||||| || | ||  |||||||| || |||||||| || ||||||||||||||||    
T  2887173 acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct 2887074  T
Q  152 gctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagc 251  Q
    ||||||| || ||||| |||| |||||| |||||||| ||||||||||||||||| |  || |||   || |||||||| ||||| |||||||| |||||    
T  2887073 gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc 2886974  T
Q  252 cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaagcact 351  Q
    || ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| |||||||||||||||||||||||||| |||    
T  2886973 caaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaagtact 2886874  T
Q  352 aatctatc 359  Q
    ||||||||    
T  2886873 aatctatc 2886866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 386
Target Start/End: Original strand, 2897199 - 2897537
Alignment:
Q  48 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatca 147  Q
    ||||||||||||||  |||||||||||| |||  |||||||||||||| ||||| || | ||  |||||||| || |||||||| || ||||||||||||    
T  2897199 actaacctttctggaattggaatcaacttctgctggtaaacgaagccaggccgagtagaccattgactcatagacagtaacatgaggagaatggatatca 2897298  T
Q  148 ttctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcc 247  Q
    ||||||||||| || ||||| |||| |||||| ||||||||  ||||| |||| || || |  || |||   ||||| ||||| ||||| ||||| || |    
T  2897299 ttctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccatcgatataaccaccggtttttctac 2897398  T
Q  248 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    |||||| ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||||||||||||||||||||||||||    
T  2897399 cagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaag 2897498  T
Q  348 cactaatctatcttctctaacaccttgctccttcatttc 386  Q
     ||||||||||| |||   ||||||||  ||||||||||    
T  2897499 tactaatctatcctctactacaccttgaaccttcatttc 2897537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 39547487 - 39547743
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| || ||||| || |||||||| || |||||||||||| | ||||||||||| || |||||||| ||||| || |||||||    
T  39547487 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgct 39547586  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    | || || || |||||||   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| || || ||| | ||    
T  39547587 tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcac 39547686  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    |||||||| ||| |||||||| || || ||||| || ||||| ||||||||||||||    
T  39547687 acccatcagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag 39547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 39366163 - 39365925
Alignment:
Q  115 tcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttga 214  Q
    ||||| || |||||||| || |||||||||||| | ||||| ||||| ||||||||||| ||||| ||||||||||| || || || |||||||   |||    
T  39366163 tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtga 39366064  T
Q  215 tgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacccc 314  Q
    |||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |||||||||| ||| |||||||| ||    
T  39366063 tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacc 39365964  T
Q  315 gggcctgaatgcaccactaacacccttcaaaagcactaa 353  Q
     || ||||| || ||||||| |||||||| ||| |||||    
T  39365963 tggtctgaaagctccactaagacccttcagaagaactaa 39365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 91 - 353
Target Start/End: Complemental strand, 39338834 - 39338572
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| || ||||| || |||||||| || |||||||||||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  39338834 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgct 39338735  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    | || ||  | || || |  |||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |     
T  39338734 tctttggaaagccggaaattttgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgat 39338635  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaagcactaa 353  Q
     ||||||| ||| |||||||| || || ||||| || ||||| |||||||||||||| |||||    
T  39338634 gcccatcagagcggtgagaacacctggtctgaaagctccacttacacccttcaaaagaactaa 39338572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 362
Target Start/End: Complemental strand, 39353662 - 39353406
Alignment:
Q  106 agcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccag 205  Q
    ||||| || ||||| || |||||||  || |||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||||| || || || |    
T  39353662 agcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccgg 39353563  T
Q  206 ataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgt 305  Q
    | |   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||| ||||||||||| ||||| ||| | |  ||||||| ||| ||    
T  39353562 aaattgtgatgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgt 39353463  T
Q  306 gagaaccccgggcctgaatgcaccactaacacccttcaaaagcactaatctatcttc 362  Q
    |||||| || || ||||| || ||||| |||||||| ||||| |||||  |||||||    
T  39353462 gagaacacctggtctgaaagctccacttacaccctttaaaagaactaacttatcttc 39353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 39564266 - 39564522
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| || ||||| || |||||||  || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||    
T  39564266 agccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct 39564365  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    | || ||  | || || |   ||||||  ||| |||||||||| || |||||||| ||||  || |||||||||||||||||||| ||||| ||  | ||    
T  39564366 tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac 39564465  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    |||||| | ||| |||||||| || || ||||| || ||||| ||||||||||||||    
T  39564466 acccattagagcagtgagaacaccaggtctgaaagctccacttacacccttcaaaag 39564522  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 320
Target Start/End: Original strand, 39589303 - 39589544
Alignment:
Q  79 gaaggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaa 178  Q
    ||||| || |||||||| || ||||| ||||| || ||||| || |||||||| || || ||||||||||| ||||||||||| ||||||||||| ||||    
T  39589303 gaaggcaatcgaagccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaa 39589402  T
Q  179 atgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttacc 278  Q
    ||||||||||||| ||||| || ||||| |   |||||   ||| ||||||||||||| ||||| || ||||  || ||||||| || ||| ||||| ||    
T  39589403 atgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttcc 39589502  T
Q  279 agctccacttacacccatcaaagctgtgagaaccccgggcct 320  Q
    ||| ||  | || ||||| ||||| |||||||| || |||||    
T  39589503 agcacccgtgacgcccattaaagcagtgagaacaccaggcct 39589544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 39575077 - 39575333
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| |||||||| || |||| ||| || || || |||||||| ||||||||||| || |||||||| ||||| ||||||||||    
T  39575077 agccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgct 39575176  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    |||| || | ||| || ||  ||||||  |||  ||||||||| ||  ||||||| ||||| || |||||||||| ||||||||| ||||| ||| | ||    
T  39575177 ttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgac 39575276  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    |||||| |  || |||||||| || ||||| || || || || ||||| ||||||||    
T  39575277 acccataagtgcagtgagaacacctggcctaaaagctccgctgacaccgttcaaaag 39575333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 39538029 - 39538285
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| || ||||| || |||||||  || |||||||||||| | ||||||||||| || |||||||| ||||| || |||||||    
T  39538029 agccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgct 39538128  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    | || || || ||||| |   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| || || ||  | ||    
T  39538129 tctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtgac 39538228  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
     ||||||| ||| |||||||| || || ||||| || ||||| | ||| ||||||||    
T  39538229 gcccatcagagcagtgagaacacctggtctgaaagctccactgagacctttcaaaag 39538285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 344
Target Start/End: Original strand, 39622083 - 39622336
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| |||||| | ||||| || ||||| || |||||||  || |||||||||| ||| || |||||||| ||| ||| ||| ||||| ||||| ||||    
T  39622083 agccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgct 39622182  T
Q  191 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 290  Q
    | || |  || ||||| |   |||||   ||| |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | ||    
T  39622183 tctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcac 39622282  T
Q  291 acccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaa 344  Q
    |||||||| ||||||||||||  | || ||||||| |||||| ||||| |||||    
T  39622283 acccatcagagctgtgagaacagccggtctgaatgaaccactgacaccattcaa 39622336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 1084823 - 1084925
Alignment:
Q  91 agccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 190  Q
    ||||| || ||||| ||||| ||||| || || |||| ||| || |||||||||||  | ||||||||||| ||||||||||| | ||||||||||||||    
T  1084823 agccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgct 1084922  T
Q  191 ttt 193  Q
    |||    
T  1084923 ttt 1084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 82 - 347
Target Start/End: Original strand, 2160848 - 2161113
Alignment:
Q  82 ggtaaacgaagccacgccgaataaagcaaggactcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatg 181  Q
    |||||||||||||| |||||||| | ||| || |||||||| |||||||  |||||||||||||||   ||||| || || || || || | ||||||||    
T  2160848 ggtaaacgaagccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatg 2160947  T
Q  182 tttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagc 281  Q
    ||| ||| || || || || || ||||   |||||| |||||||||||||||||| |||||||| ||||| | ||||||||| ||||| || || || ||    
T  2160948 ttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggc 2161047  T
Q  282 tccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
     |||||||||||||||||||| || || || || ||||| || || ||| | | ||||||||||||    
T  2161048 accacttacacccatcaaagcagttagtactccaggcctaaaggcgccattgatacccttcaaaag 2161113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 2148988 - 2149130
Alignment:
Q  205 gataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctg 304  Q
    ||||| ||||||| ||| ||||| |||||||  |||||  | ||||| | ||||||||| | ||| || || ||||| ||||||||||||||||||||||    
T  2148988 gatactttgatgtttccttcaatgtatccactagtttttattccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctg 2149087  T
Q  305 tgagaaccccgggcctgaatgcaccactaacacccttcaaaag 347  Q
    | || || || || || || |||||||||||||||||||||||    
T  2149088 ttagtactccaggtctaaaagcaccactaacacccttcaaaag 2149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 49773298 - 49773102
Alignment:
Q  115 tcataaacggtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttga 214  Q
    ||||| || |||||||| || || ||||||||| | ||||||||||| || || || | || ||||||||||||||| ||||||||||| ||||   |||    
T  49773298 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttgcttcttagggtacccggatatagtga 49773199  T
Q  215 tgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaac 311  Q
    | | ||| | || ||||||   ||||||||| |||| ||| |||||||| ||||||||||||||||||||||||| |||||| | |||||| |||||    
T  49773198 tttgtccttgaacatatcctgttgttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgtcagaac 49773102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 25523303 - 25523423
Alignment:
Q  168 aattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcaga 267  Q
    |||||| ||||||||  |||||  ||| || || |||||||  || || ||||| || |||||||| ||||||||||| || || || |||||||| | |    
T  25523303 aattctggcaaatgtggcttgcacttttggataaccagatattttaatatctccctcgatatatcctcctgttttccttcctgcaagcacatccattaaa 25523402  T
Q  268 gttgttttaccagctccactt 288  Q
    || ||||| ||||||||||||    
T  25523403 gtggttttcccagctccactt 25523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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