View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21057_low_6 (Length: 292)
Name: NF21057_low_6
Description: NF21057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21057_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 51105040 - 51104873
Alignment:
| Q |
116 |
acccatatgatcatggtatcaagaagaattgttctgattttttgatcaatgggtacaatgaagatttagagtatgttgaagaaacaaatggagactcttg |
215 |
Q |
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| T |
51105040 |
acccatatgatcatggtatcaagaagaattgttctgattttttgatcaatgggtacaatgaagatttggagtatgttgaagaaacaaatggagactcttg |
51104941 |
T |
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| Q |
216 |
ttctcataatgccaagggcaactgaaattaaatggctatgttgttattaatataaattcaatattgtt |
283 |
Q |
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| T |
51104940 |
ttctcataatgccaagggaaactgaaattaaatggctatgttgttattaatataaattcaattttgtt |
51104873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 51114597 - 51114489
Alignment:
| Q |
116 |
acccatatgatcatggtatcaagaagaattgttctgattttttgatcaatgggtacaatgaagatttagagtatgttgaagaaacaaatggagactcttg |
215 |
Q |
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| T |
51114597 |
acccatatgatcatggtatcaagaagaattgttctgattttttgatcaatgggtacaatgaagatttagagtatgttgaagaaacaaatggagactcttg |
51114498 |
T |
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| Q |
216 |
ttctcataa |
224 |
Q |
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||||||||| |
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| T |
51114497 |
ttctcataa |
51114489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 51105184 - 51105068
Alignment:
| Q |
1 |
ctaattgctgataatttcctcttctggcctgcgttggacttaacagtgatgcaggctagtaatatatcgagcaatcttacaacaaacgaaatgataaatc |
100 |
Q |
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| T |
51105184 |
ctaattgctgataatttcctcttctggcct-cgttggacttaacagttatgcaggctagtaatatatcgagcaatcttacaacaaacgaaatgataaatc |
51105086 |
T |
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| Q |
101 |
atgagcggtatagctacc |
118 |
Q |
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| T |
51105085 |
atgagcggtatagctacc |
51105068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 51114742 - 51114625
Alignment:
| Q |
1 |
ctaattgctgataatttcctcttctggcctgcgttggacttaacagtgatgcaggctagtaatatatcgagcaatcttacaacaaacgaaatgataaatc |
100 |
Q |
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|||||||||||| || || ||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114742 |
ctaattgctgattatatcttcttctggcctatgttgggtttaacagttgagcaggcgagtaatatatcgagcaatcttacaacaaacgaaatgataaatc |
51114643 |
T |
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| Q |
101 |
atgagcggtatagctacc |
118 |
Q |
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| T |
51114642 |
atgagcggtatagctacc |
51114625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 48039812 - 48039894
Alignment:
| Q |
116 |
acccatatgatcatggtatcaagaagaattgttctgattttttgatcaatgggtacaatgaagatttagagtatgttgaagaa |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
48039812 |
acccatatgatcatggtatcaagaagaactgttctgattttttgatcaatgggtacaatgaagacttggagtatgttgaagaa |
48039894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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