View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21058_low_1 (Length: 571)
Name: NF21058_low_1
Description: NF21058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21058_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 183 - 553
Target Start/End: Complemental strand, 5175000 - 5174630
Alignment:
| Q |
183 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5175000 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
5174901 |
T |
|
| Q |
283 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174900 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
5174801 |
T |
|
| Q |
383 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtctgtgttgaagataagcaaatgcctaataaa |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5174800 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtttgtgttgaagataagcaaatgcctaataaa |
5174701 |
T |
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| Q |
483 |
gaattttcacttatgatcttggagcaggaccttgtaattatattagagacagtgagaattattgccattgc |
553 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174700 |
gaattttcacttatgatcttggagcaggaccttgtaattatattagagacagtgagaattattgccattgc |
5174630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 183 - 553
Target Start/End: Complemental strand, 52002800 - 52002433
Alignment:
| Q |
183 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc |
282 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| |
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| T |
52002800 |
cgttaaacaaaaaagtaacataataagattaatcaaggtattttatttgccaataatatttgtaccatcat---aaaagatagattctacggtttgtttc |
52002704 |
T |
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| Q |
283 |
cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
382 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002703 |
cactaaatctttacttgatatttgatcaaattaaatccaaatactgaacacctttttcttttctcacattaatcaatttgcttttcatatattgtcatca |
52002604 |
T |
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| Q |
383 |
gcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtctgtgttgaagataagcaaatgcctaataaa |
482 |
Q |
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||||||||| |||||||||| ||||||||||| ||| ||||||||||| |||| || ||||||||| | || |||||||||||||||||||||| ||| |
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| T |
52002603 |
gcaattgaactttgtttttcgtccttaaccaagtattataagcatattgcatacgtctcttcttttcatttggtttgaagataagcaaatgcctaagaaa |
52002504 |
T |
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| Q |
483 |
gaattttcacttatgatcttggagcaggaccttgtaattatattagagacagtgagaattattgccattgc |
553 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002503 |
gaattttcacatatgatgttggagcaggaccttgtaattatattagagacagtgagaattattgccattgc |
52002433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5178386 - 5178208
Alignment:
| Q |
1 |
atagttttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctctttacttagaagggcatgcttacttgcttctaga |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5178386 |
atagttttaacttgaggttctaa-ctcttatactgacaattttttctttttaaattgtacaaggtctttacttagaagggcatgcttacttgcttctaga |
5178288 |
T |
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| Q |
101 |
acttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178287 |
acttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt |
5178208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 52008525 - 52008403
Alignment:
| Q |
58 |
tacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaa |
157 |
Q |
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|||||| |||||||||||||| | ||| || |||| ||||||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||| || |
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| T |
52008525 |
tacaagatctttacttagaagagaatgattttttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaa |
52008426 |
T |
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| Q |
158 |
tctgatgatgggaaattttgatt |
180 |
Q |
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| T |
52008425 |
tttgatgatgggaaattttgatt |
52008403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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