View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21058_low_4 (Length: 286)
Name: NF21058_low_4
Description: NF21058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21058_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 29339568 - 29339343
Alignment:
| Q |
42 |
cacatttcaacaatttgttattaattattttggcaggagtatagtatatttatggatccatctcacttaggttagatagtgacatattgtcggaggtgag |
141 |
Q |
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| T |
29339568 |
cacatttcaacaatttgttattaattattttggcaggagtatagtatatttatggatccatctcacttaggttagatattgacatattgtcggaggtgag |
29339469 |
T |
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| Q |
142 |
atgtgagagaccgatgatcttcttaatgtatgattgtgatgatgatccgcgtgctccgtgttctagatgaggttctcaattgctattgtgttggtggagc |
241 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29339468 |
atgtgagaggccgatgatcttcttaatgtatgattgtgatgatgatccgcgtgctccgtgttctagatgaggttttcaattgctattgtgttggtggagc |
29339369 |
T |
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| Q |
242 |
gagcttgtcaccgtaggtctagtccg |
267 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29339368 |
gagcttgtcaccgtaggtctagtccg |
29339343 |
T |
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