View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21059_high_4 (Length: 264)
Name: NF21059_high_4
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 18313795 - 18313877
Alignment:
| Q |
92 |
taaacaaaatgttatagtgtgtttaatgcattggttaaataaacgaatatagaaatatgatgttagaaaagtggtaaatccaa |
174 |
Q |
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| T |
18313795 |
taaataaaatgttatagtgtgtttaatgcattggttaaataaacaaatatagaaatattatgttagaaaagtggtatatccaa |
18313877 |
T |
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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 18313902 - 18313976
Alignment:
| Q |
176 |
tttttcattaaaa-ttattgttcaacttaaatttatataaaaactgttgtgtagatagattagctaatcatcatg |
249 |
Q |
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| T |
18313902 |
tttttcattaaaaattattgttcaacttaaatttatataaaaattgttgtgtagatatattatctaatcatcatg |
18313976 |
T |
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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18313745 - 18313799
Alignment:
| Q |
1 |
caataaaacttgtgttatattagtgcaatattttcttaaaaaatatgatgtaaat |
55 |
Q |
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| T |
18313745 |
caataaagtttgtgttatgataatgcaatattttcttaaaaaatatgatgtaaat |
18313799 |
T |
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