View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21059_low_1 (Length: 569)
Name: NF21059_low_1
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 30 - 562
Target Start/End: Original strand, 44397506 - 44398037
Alignment:
| Q |
30 |
ggagataagtaaggtttggataaagattgtttcagggtttctattcgtccttaactctaaagttcattaatcatttgagttcaatcacttacttggttta |
129 |
Q |
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| T |
44397506 |
ggagataagtaaggtttggattaagattgtttcagggtttctattcgtccttaactctaaagttcattaatcattttagttcaatcacttacttggtt-a |
44397604 |
T |
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| Q |
130 |
ctttaacttcgaaatttcaaaaaacatcaagtttattttatatttaattattgaagtttgtaaaattctattgaaacttttgttctcttgcatggttttg |
229 |
Q |
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| T |
44397605 |
ctttaacttccaaatttcaaaaaacatcaagtttattttatatttaattattgaagtttgtaaaattctattgaaacttttgttctcttgcatggttttg |
44397704 |
T |
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| Q |
230 |
ctttacatattttgaatttggaatacaaaagactttaattgaattattattttgttaaatttctgtgaagatctacttcctgtgatagaattgcataatt |
329 |
Q |
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| T |
44397705 |
cttcacatattttgaatttggaatacaaaagactttaattgaattattattttgttaaatttctgtgaagatctacttcctgtgatagaattgcataatt |
44397804 |
T |
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| Q |
330 |
gtaatggataaacactggtagcaaatgttacaatcttgattgtaatgaatatataattaagtttttcaatcatgatgttaacgtctaacttttttccaga |
429 |
Q |
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| T |
44397805 |
gtaatggataaacactggtagcaaatgttacaatcttgattgtaatgaatatataattaagtttttcaatcatgatgttaacgtctaacttttttccaga |
44397904 |
T |
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| Q |
430 |
tattgtgagggagattttgagtgcctggcctgcggtctgtaagttgtgtgactcgacaaacaccagtcccctatatgctgctgcagttcaagatcacttg |
529 |
Q |
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| T |
44397905 |
tattgtgagggagattttgagtgcctggcctgcggtctgtaagttgtgcgactcgacaaacaccagtcccctatatgctgctgctgttcaagatcacttg |
44398004 |
T |
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| Q |
530 |
gatgtggtaaatgctattttggatgatgatgtc |
562 |
Q |
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| T |
44398005 |
gatgtggtaaatgctattttggatgttgatgtc |
44398037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 562
Target Start/End: Original strand, 11358861 - 11359004
Alignment:
| Q |
419 |
ttttttccagatattgtgagggagattttgagtgcctggcctgcggtctgtaagttgtgtgactcgacaaacaccagtcccctatatgctgctgcagttc |
518 |
Q |
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| T |
11358861 |
ttttttccagaaattgtgagggagattttgagtacttggcctgaggcttgtaagttatgcgactcttcgaacactagtccactttatttagctgctgttc |
11358960 |
T |
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| Q |
519 |
aagatcacttggatgtggtaaatgctattttggatgatgatgtc |
562 |
Q |
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| T |
11358961 |
aagaccatttggatgtggtgaatgctattttggatgttgatgtc |
11359004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 37606984 - 37606951
Alignment:
| Q |
87 |
taaagttcattaatcatttgagttcaatcactta |
120 |
Q |
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| T |
37606984 |
taaaattcattaatcatttgagttcaatcactta |
37606951 |
T |
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Back To:
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