View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21059_low_2 (Length: 470)
Name: NF21059_low_2
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 4 - 453
Target Start/End: Original strand, 36135086 - 36135548
Alignment:
| Q |
4 |
agagagaagaaaaatagatagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatata---- |
99 |
Q |
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| T |
36135086 |
agagagaagaaaaatagatagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatatataga |
36135185 |
T |
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| Q |
100 |
----------gtccaaatacaaaagttgtttaagtaattgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatc |
189 |
Q |
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| T |
36135186 |
atttatgagtgtccaaatataaaagttgtttaagtaattgataaaagtatttctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatc |
36135285 |
T |
|
| Q |
190 |
attaagtgtttggttgaaaaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattat |
289 |
Q |
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| T |
36135286 |
attaagtgtttggttgaaaaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgtttttt-ggaggaggtaatatattattat |
36135384 |
T |
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| Q |
290 |
gggaagttgtgattttcaaccatattttttattttgcaaaatctcttaaaaatatttggttatttcaagttgatcatttgataagtcggaatcatatatt |
389 |
Q |
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| T |
36135385 |
gggaagttgtgattttcaaccatattttttattttgcaagatctcttaaaaataattggttatttcaagttgatcatttgataagtcggaatcatatatt |
36135484 |
T |
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| Q |
390 |
caagcgcattgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaag |
453 |
Q |
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| T |
36135485 |
caagcgcattgttatattgataaaagcttggtgttaccatgagagtcgtctcttgggttctaag |
36135548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 128 - 453
Target Start/End: Original strand, 41336660 - 41336980
Alignment:
| Q |
128 |
tgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaaaatttgtaattgacatatc |
227 |
Q |
| |
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||||||||||||| ||||||||||||||||| || || |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41336660 |
tgataaaaatatttttcaaccttcgcgtgttttttgtt---gttcaatgccaggtgaagatcattaagtgcttggttgaaaaatttgtaattgacatatc |
41336756 |
T |
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| Q |
228 |
tttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattatgggaagttgtgattttcaaccatatttt-ttattttgc |
326 |
Q |
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| T |
41336757 |
tttcaaccaattgagtggtttatgctcactttgtttttt-ggacgaggtaatat-ttattatagtaagttgtgattt-caagcatatttttttattttgc |
41336853 |
T |
|
| Q |
327 |
aaaatctcttaaaaatatttggttatttcaagttgatcatttgataagtcggaatcatatattcaagcgcattgttatattgataaaagcttggtgttac |
426 |
Q |
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| T |
41336854 |
aagatctctaaaaaataatcgattattgcaggttgattatttgataagtcggaatcatatattcaagcgcagtgttatattgataaaagcttggtgttac |
41336953 |
T |
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| Q |
427 |
catgagagtcgtctcttgggttctaag |
453 |
Q |
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| T |
41336954 |
catgagagtcgtctcttgggttctaag |
41336980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 10136129 - 10136077
Alignment:
| Q |
379 |
aatcatatattcaagcgcattgttatattgataaaagcttggtgttaccatga |
431 |
Q |
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|||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
10136129 |
aatcatttattcaagcgtagcattatattgataaaagcttggtgttactatga |
10136077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 6463169 - 6463213
Alignment:
| Q |
27 |
tgatgtgataaatgtgatatgttaataatataatggaaacaaaga |
71 |
Q |
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| T |
6463169 |
tgatgtgataaatgtgatatgttaatgatgtaatgggaaaaaaga |
6463213 |
T |
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