View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21059_low_4 (Length: 315)
Name: NF21059_low_4
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 33036417 - 33036711
Alignment:
| Q |
5 |
gagtgagatgaacatacctatgggagaagttgtacttatagggatacattcaaatgatacactccttgttgttcttgtttttcctcttgccatctggttc |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33036417 |
gagtgaggtgaacatacctatgggagaagttgtacttatagtgatacattcaaatgatacactccttgttgttcttgtttttcctcttgccatctggttc |
33036516 |
T |
|
| Q |
105 |
ggttagttacaaataaataatgtttgtttatagtaattgattttgagataaacaaatgcacctatccaattcacataagctctttattagtaatagcatc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
33036517 |
ggttagttacaaataaataatgtttgtttatagtaattgattttgagataaacaaatgcacctatctaattcacataagctttttattagtaatagcatc |
33036616 |
T |
|
| Q |
205 |
ccattaatgatttgatagtatgtatgtgctaagacagtggaacatgttggtgcttggttctttcaagttatggaaacgaggttgtccctcaaaca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33036617 |
ccattaatgatttgatagtatgtatgtgctaagacagtggaacatgttggtgcttggttctttcaagttatggaaacgaggttgtccctcaaaca |
33036711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University