View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21059_low_5 (Length: 264)

Name: NF21059_low_5
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21059_low_5
NF21059_low_5
[»] chr5 (3 HSPs)
chr5 (92-174)||(18313795-18313877)
chr5 (176-249)||(18313902-18313976)
chr5 (1-55)||(18313745-18313799)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 18313795 - 18313877
Alignment:
Q  92 taaacaaaatgttatagtgtgtttaatgcattggttaaataaacgaatatagaaatatgatgttagaaaagtggtaaatccaa 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  18313795 taaataaaatgttatagtgtgtttaatgcattggttaaataaacaaatatagaaatattatgttagaaaagtggtatatccaa 18313877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 18313902 - 18313976
Alignment:
Q  176 tttttcattaaaa-ttattgttcaacttaaatttatataaaaactgttgtgtagatagattagctaatcatcatg 249  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  18313902 tttttcattaaaaattattgttcaacttaaatttatataaaaattgttgtgtagatatattatctaatcatcatg 18313976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18313745 - 18313799
Alignment:
Q  1 caataaaacttgtgttatattagtgcaatattttcttaaaaaatatgatgtaaat 55  Q
    |||||||  |||||||||  || ||||||||||||||||||||||||||||||||    
T  18313745 caataaagtttgtgttatgataatgcaatattttcttaaaaaatatgatgtaaat 18313799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University