View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21059_low_8 (Length: 250)
Name: NF21059_low_8
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 38401136 - 38401351
Alignment:
| Q |
17 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataactaattgtaactcgaacatgggaaagaagaatttcattggtgtctttcca |
116 |
Q |
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| T |
38401136 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactcaaacatgggaaagaagaatttcattggtgtctttcca |
38401235 |
T |
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| Q |
117 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38401236 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
38401335 |
T |
|
| Q |
217 |
aagtatcatttgaatt |
232 |
Q |
| |
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|||||||||||||||| |
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| T |
38401336 |
aagtatcatttgaatt |
38401351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 38392564 - 38392775
Alignment:
| Q |
21 |
ggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataactaattgtaactcgaacatgggaaagaagaatttcattggtgtctttccatttt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||| ||||||||||| || ||||||||| |
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| T |
38392564 |
ggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactcaaacaagatcaagaaggatttcattggtctccttccatttt |
38392663 |
T |
|
| Q |
121 |
cgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaacaaagt |
220 |
Q |
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||| |||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| | |||||||||||||||||| || ||||||||| |
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| T |
38392664 |
cgtagccaccccataaaccatctgaaacaatatggggtggagcctcagaacaaacattgtatattggtccattcaatcttttaatttcgttgaacaaagt |
38392763 |
T |
|
| Q |
221 |
atcatttgaatt |
232 |
Q |
| |
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|| ||||||||| |
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| T |
38392764 |
ataatttgaatt |
38392775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 38383703 - 38383918
Alignment:
| Q |
17 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataactaattgtaactcgaacatgggaaagaagaatttcattggtgtctttcca |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||| | |||||| ||||||||||| || ||||| |
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| T |
38383703 |
caaaggtttgagaaggaaactacatatttgagtgagtgcaaaaatgataatcaactgtaactcaaacaatgttaagaaggatttcattggtctccttcca |
38383802 |
T |
|
| Q |
117 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
216 |
Q |
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|| ||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| | |||||||||||||||||| || ||||| |
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| T |
38383803 |
ttatcgtggccaccccataaaccatctgaaacaatatggggtggagcctcaaaacaaactttgtatattggtccattcaatcttttaatttcgttgaaca |
38383902 |
T |
|
| Q |
217 |
aagtatcatttgaatt |
232 |
Q |
| |
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|||||| ||||||||| |
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| T |
38383903 |
aagtataatttgaatt |
38383918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 37838659 - 37838444
Alignment:
| Q |
17 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataactaattgtaactcgaacatgggaaagaagaatttcattggtgtctttcca |
116 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| |||| || || || ||||||||||| || || || |
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| T |
37838659 |
caaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaaaaaagatttcattggtctcctttca |
37838560 |
T |
|
| Q |
117 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
216 |
Q |
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|||||||| ||| |||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||| |
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| T |
37838559 |
ttttcgtgaccactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttgtatacagtttcattcaatcttttaatttcgtagaaca |
37838460 |
T |
|
| Q |
217 |
aagtatcatttgaatt |
232 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
37838459 |
aagtatcatttgaatt |
37838444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 37844222 - 37844007
Alignment:
| Q |
17 |
caaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataactaattgtaactcgaacatgggaaagaagaatttcattggtgtctttcca |
116 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||| || ||||| ||||||||||| || ||||| |
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| T |
37844222 |
caaagatttgagaagaaaacgacatatttgcgtgagtgcaaaaatgataaccaattgtaactcaaacaaggtcaagaaagatttcattggtctccttcca |
37844123 |
T |
|
| Q |
117 |
ttttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattgtatattgtttcattcaatcttttaatttggtagaaca |
216 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||| | ||||||||||| | | ||| ||||| || |||||||||||||||||||| |||||||| |
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| T |
37844122 |
ttttcatggccaccccataaaccatctgaaacaatatggggtggagcctctaaataaattttgtaacctgcttcattcaatcttttaatttcgtagaaca |
37844023 |
T |
|
| Q |
217 |
aagtatcatttgaatt |
232 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
37844022 |
aagtatcatttgaatt |
37844007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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