View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21059_low_9 (Length: 248)
Name: NF21059_low_9
Description: NF21059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21059_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 4648148 - 4648313
Alignment:
| Q |
69 |
atattagcaggactaaatttaatataactaaaataaatagagtattgaaaacttattgatcttatgaactaaggcgtgccaatgcattgagcttaagagt |
168 |
Q |
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| T |
4648148 |
atattagcaggaataaatttaatataaataaaataaatagagtattgaaaacttattgatcttatgaactaaggcgtgccaatgcattgagcttaagagt |
4648247 |
T |
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| Q |
169 |
tttcgctaccaaagataagttatccgatgttgttggtcttatagctagtactcttcatgatacaac |
234 |
Q |
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| T |
4648248 |
tttcgctaccaaatataagttacccgatgttgttggtctcatagctagtactcttcaggatacaac |
4648313 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4648109 - 4648042
Alignment:
| Q |
1 |
ccaacacttctattttggttcggggtagatggaggggagaggagaggaggaaatgttgttaatcatat |
68 |
Q |
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| T |
4648109 |
ccaacacttctattttggttcggggtagatggaggggagaggagaggaggaaatgttgttaatcatat |
4648042 |
T |
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