View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2105_high_4 (Length: 358)
Name: NF2105_high_4
Description: NF2105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2105_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 342
Target Start/End: Complemental strand, 1555331 - 1554993
Alignment:
| Q |
3 |
gatgtcgaagaatattggagatgtaccttaataatttacaatatcctaaatcatctctaagctttggtttctatatttctttatattttatggtttgttt |
102 |
Q |
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| T |
1555331 |
gatgtcgcataatgttggagatgtaccttaataatttacaatatcctaaatcatctctaagatttggtttctatatttctttatattttatggtttgttt |
1555232 |
T |
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| Q |
103 |
ccttgatagattaggattaggagtctaaaactagtgtttaaatttgaaaagaacaccagcaagagctcaatatctggtatctgaaactagtgtcttgttt |
202 |
Q |
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| T |
1555231 |
ccttgatagattaggattaggagtctaaaactagtgtttaaatttgaaaagaacgccagcaagagctcaatatctggtatctgaaactagtgtcttgttt |
1555132 |
T |
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| Q |
203 |
tcttcattgaaccactttacaataacctttgattccttgtaagatggtacagatcattaaccatactacctagaatccaatttctcaaaagtcgcaagac |
302 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555131 |
tcttcatt-aaccactttacaataaccttcgattccttgtaagatggtacagatcattaaccatactacctagaatccaatttctcaaaagtcgcaagac |
1555033 |
T |
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| Q |
303 |
ctttggagtagatataaacgaccaatgtatgtgatgttcc |
342 |
Q |
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| T |
1555032 |
ctttggagtagatataaacgaccaatgtatgtgatgttcc |
1554993 |
T |
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