View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2105_low_2 (Length: 640)

Name: NF2105_low_2
Description: NF2105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2105_low_2
NF2105_low_2
[»] chr4 (2 HSPs)
chr4 (18-604)||(3569208-3569805)
chr4 (182-228)||(53836339-53836387)
[»] chr8 (1 HSPs)
chr8 (142-208)||(9641280-9641346)
[»] chr5 (2 HSPs)
chr5 (156-210)||(29050594-29050648)
chr5 (148-183)||(16504174-16504209)
[»] chr3 (2 HSPs)
chr3 (140-210)||(46635336-46635406)
chr3 (160-204)||(54452960-54453004)
[»] chr2 (1 HSPs)
chr2 (136-219)||(1941771-1941853)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Original strand, 3569208 - 3569805
Alignment:
Q  18 aaatttttgttcactttatccatttcttgagtaccatattttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3569208 aaatttttgttcactttatccatttcttgagtaccatattttattctaaaaatgtccttgagcatttcatatgttataatccgaaaagagtttttcccct 3569307  T
Q  118 cttttcgaggnnnnnnnntgagttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacaccccaaaaaa-ggg 216  Q
     |||||| ||        |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  3569308 attttcggggaaaaaaaatgagttttccaccaattcggattataaaatccaaacaaataagtagctcggattttataatctgaacaccccaaaaaaaggg 3569407  T
Q  217 cgtgttccttgcnnnnnnncagattataagatcgatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactgggc-------- 308  Q
     |||||||||||       |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  3569408 tgtgttccttgctttttttcagattataagatgcatacactcctcttgtgcaaaaattcaaggaaaaacataatcaaattatataactggaactgtatca 3569507  T
Q  309 --acaaatattgagcttgtttgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatca 406  Q
      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3569508 aaacaaatattgagcttgattgtaacttgtctccacctgattttttcagagtgaatagacttgatagtccctggattattttcatcattttcatagatca 3569607  T
Q  407 acttgctctgcaatttttattaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3569608 acttgctctgcaatttttattaaatagctaaatagtcttcaatttcactgacgactattaaataagcccatctgagtttggtcgttagacatgctgctaa 3569707  T
Q  507 catgtattagaaaacgatgagttgtttgtaatagcttcataactcctaaattattttgaaatagctaactagtctctcgacctcttcattttttccct 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3569708 catgtattagaaaacgatgagttgtttgtaatagcttcataactcctaaattattttgaaatagctaactagtctctcgacctcttcattttttccct 3569805  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 53836387 - 53836339
Alignment:
Q  182 ttcggattttataatctgaacaccccaaaaa--agggcgtgttccttgc 228  Q
    |||| ||||||||||||||||||||||||||  ||| ||||||||||||    
T  53836387 ttcgaattttataatctgaacaccccaaaaaataggacgtgttccttgc 53836339  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 9641346 - 9641280
Alignment:
Q  142 ttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacacccca 208  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||| ||||||    
T  9641346 ttccaccaattcggattctaaaatccaaataaataagtaattcgaattttataatttgaagacccca 9641280  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 29050648 - 29050594
Alignment:
Q  156 attataaaatccaaacaaataagtagttcggattttataatctgaacaccccaaa 210  Q
    |||||||||||||||||||||||||||| |||||||||| | |||||||| ||||    
T  29050648 attataaaatccaaacaaataagtagtttggattttatattatgaacaccgcaaa 29050594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 16504174 - 16504209
Alignment:
Q  148 caattcggattataaaatccaaacaaataagtagtt 183  Q
    |||||| |||||||||||||||||||||||||||||    
T  16504174 caattcagattataaaatccaaacaaataagtagtt 16504209  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 46635406 - 46635336
Alignment:
Q  140 ttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacaccccaaa 210  Q
    |||| ||||||||| ||||||||||||| || |||| ||||||| | ||| ||||||||||| ||||||||    
T  46635406 tttttcaccaattctgattataaaatccgaataaatgagtagtttgaattctataatctgaaaaccccaaa 46635336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 54453004 - 54452960
Alignment:
Q  160 taaaatccaaacaaataagtagttcggattttataatctgaacac 204  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||    
T  54453004 taaaatccaaaaaaataagtatttcggattttataatccgaacac 54452960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 1941771 - 1941853
Alignment:
Q  136 tgagttttccaccaattcggattataaaatccaaacaaataagtagttcggattttataatctgaacaccccaaaaaagggcgt 219  Q
    ||||||||| ||| |||||||||| ||||||| || || ||||||||||||||||| ||||  |||||||| | || |||||||    
T  1941771 tgagttttc-accgattcggattacaaaatccgaataagtaagtagttcggattttgtaatacgaacacccaataatagggcgt 1941853  T

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