View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2105_low_3 (Length: 523)
Name: NF2105_low_3
Description: NF2105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2105_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 40288999 - 40288497
Alignment:
| Q |
14 |
aaaacaaggtgtgtttagcttgctcatacagggaaataaattactcaattctcacccagttgatcattattttcttcgtatgttataggtgccatcgttg |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40288999 |
aaaacaaggtgtgtttaacttgctcatacagggaaataaattactcaattctcacccagttgatcattattttcttcgaatgttataggtgccatcgttg |
40288900 |
T |
|
| Q |
114 |
gagcacaacaggaaagtcttgggagaaagtctcgatttgatcagttacatagatgtcaactttgaagggctatctctagttcccagtgtgagaaagcact |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288899 |
gagcacaacgggaaagtcttgggagaaagtctcgatttgatcagttacatagatgtcaactttgaagggctatctctagttcccagtgtgagaaagcact |
40288800 |
T |
|
| Q |
214 |
ctcccgcacctctnnnnnnnnntcgattatttcagtggacatagttttaagattttgtttttcaggatcctgcaaagaaagagtttggtgatcagttgat |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288799 |
ctcccgcacctctaaaaaaaaatcgattatttcagtggacatagttttaagattttgtttttcaggatcctgcaaagaaagagtttggtgatcagttgat |
40288700 |
T |
|
| Q |
314 |
ttctcatgttgatacattcaccaaagacctgtactcttcattgaaaggagatcctataaaacaagctggtaaggctttaaagttaataaatagaggaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288699 |
ttctcatgttgatacattcaccaaagacctgtactcttcattgaaaggagatcctataaaacaagctggtaaggctttaaagttaataaatagaggaatg |
40288600 |
T |
|
| Q |
414 |
gtatgttattctagtaggcgcaaaatgaactttcaaaattgctaatttcaatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288599 |
gtatgttattctagtaggcgcaaaatgaactttcaaaattgctaatttcaatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatg |
40288500 |
T |
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| Q |
514 |
atg |
516 |
Q |
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||| |
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| T |
40288499 |
atg |
40288497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 28914103 - 28914052
Alignment:
| Q |
463 |
aatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatga |
514 |
Q |
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||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
28914103 |
aatcaggtcctgcttctgatttcttggagaatgctcttggtaaatttgatga |
28914052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 28922025 - 28921972
Alignment:
| Q |
463 |
aatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatgatg |
516 |
Q |
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| T |
28922025 |
aatcaggtcctacttttgaattcttggagaatgctcttggtaaatttgatgatg |
28921972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 28909459 - 28909406
Alignment:
| Q |
463 |
aatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatgatg |
516 |
Q |
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||||||||||||| |||| | |||||||||||||||||| ||||||||||||| |
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| T |
28909459 |
aatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
28909406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 28914599 - 28914538
Alignment:
| Q |
280 |
atcctgcaaagaaagagtttggtgatcagttgatttctcatgttgatacattcaccaaagac |
341 |
Q |
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||||||| ||||||||||| ||||| |||||| | || |||||||||||||||||| ||||| |
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| T |
28914599 |
atcctgccaagaaagagttcggtgagcagttgttatcccatgttgatacattcacccaagac |
28914538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 28922213 - 28922153
Alignment:
| Q |
277 |
aggatcctgcaaagaaagagtttggtgatcagttgatttctcatgttgatacattcaccaa |
337 |
Q |
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|||||||||| ||||||||||||| ||| |||||| | || ||||||||||| |||||||| |
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| T |
28922213 |
aggatcctgccaagaaagagtttgctgagcagttgttatcacatgttgataccttcaccaa |
28922153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 28910309 - 28910251
Alignment:
| Q |
98 |
ataggtgccatcgttggagcacaacaggaaagtcttgggagaaagtctcgatttgatca |
156 |
Q |
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| T |
28910309 |
ataggtgccatctttggagcacaatggaaaggtattgggagaaagtcttgatttgatca |
28910251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 28922857 - 28922799
Alignment:
| Q |
98 |
ataggtgccatcgttggagcacaacaggaaagtcttgggagaaagtctcgatttgatca |
156 |
Q |
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|||||||||||| ||||||||||| | || || |||||||||||||| |||||||||| |
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| T |
28922857 |
ataggtgccatctttggagcacaatggaaaggtgttgggagaaagtcttgatttgatca |
28922799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 28909644 - 28909580
Alignment:
| Q |
277 |
aggatcctgcaaagaaagagtttggtgatcagttgatttctcatgttgatacattcaccaaagac |
341 |
Q |
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|||||||||| ||||||||| | ||||| ||||| | || ||||||||||||||||||| |||| |
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| T |
28909644 |
aggatcctgccaagaaagagctcggtgagtagttgctatcccatgttgatacattcaccagagac |
28909580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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