View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2105_low_5 (Length: 291)
Name: NF2105_low_5
Description: NF2105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2105_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 1103628 - 1103906
Alignment:
| Q |
13 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgaaccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaa |
112 |
Q |
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| T |
1103628 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaa |
1103727 |
T |
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| Q |
113 |
atcttgaactacttaccaacaacaatcaaactcttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactatt |
212 |
Q |
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| T |
1103728 |
accttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactatt |
1103827 |
T |
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| Q |
213 |
agacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
291 |
Q |
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| T |
1103828 |
agacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
1103906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 1071411 - 1071689
Alignment:
| Q |
13 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgaaccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaa |
112 |
Q |
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| T |
1071411 |
aatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgatccaatcaaggacaacaactccaactcaaccatgttgatcatgagcaaagagggaa |
1071510 |
T |
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| Q |
113 |
atcttgaactacttaccaacaacaatcaaactcttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactatt |
212 |
Q |
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| T |
1071511 |
accttgaactacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactatt |
1071610 |
T |
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| Q |
213 |
agacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
291 |
Q |
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| T |
1071611 |
agacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
1071689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 28 - 291
Target Start/End: Original strand, 1087087 - 1087350
Alignment:
| Q |
28 |
agaatagtttgggttgcaaaccgtgatgaaccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaatcttgaactactta |
127 |
Q |
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| T |
1087087 |
agaatagtttgggttgcaaaccgtgatgatccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaaccttgaaatactta |
1087186 |
T |
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| Q |
128 |
ccaacaacaatcaaactcttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactt |
227 |
Q |
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| T |
1087187 |
ccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactt |
1087286 |
T |
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| Q |
228 |
tgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
291 |
Q |
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| T |
1087287 |
tgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
1087350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 1046601 - 1046876
Alignment:
| Q |
16 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgatgaaccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaatc |
115 |
Q |
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| T |
1046601 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacaattccaactcaaccatgttgatcataagcaacgaaggaaacc |
1046700 |
T |
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| Q |
116 |
ttgaactacttaccaacaacaatcaaactcttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattaga |
215 |
Q |
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| T |
1046701 |
tagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttgtcaactacaagttctcatgttgctcaactattaga |
1046800 |
T |
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| Q |
216 |
caatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
291 |
Q |
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| T |
1046801 |
caatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgat |
1046876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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