View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2105_low_6 (Length: 239)
Name: NF2105_low_6
Description: NF2105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2105_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4406025 - 4406246
Alignment:
| Q |
1 |
tcattcacaaaa-aatataatacaaattaatcattgatattttcataccttcaaattgtgtttgtaattcatcaaaccagtggtggtgaggtctcatgca |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4406025 |
tcattcacaaaaaaatataatacaaattaatcattgatattttcataccttcaaattgtgtttgtaattcatcaaaccagtggtggtgaggtctcatgca |
4406124 |
T |
|
| Q |
100 |
aatattgttcatgatatgcacatgtgtgaaagagttttggagaaataattgtcaaaattttactgaagttgtatctaaatgtaaaagattaacttaaaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4406125 |
aatattgttcatgatatgcacatgtgtgaaagagttttggagaaataatagtcaaaattttactgaagttgtatctaaatgtaaaagattaacttaaaag |
4406224 |
T |
|
| Q |
200 |
atgagttaattttgttgtttat |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4406225 |
atgagttaattttgttgtttat |
4406246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University