View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21060_high_2 (Length: 431)
Name: NF21060_high_2
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21060_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 157 - 416
Target Start/End: Complemental strand, 41359181 - 41358934
Alignment:
| Q |
157 |
aacattctacaactatagtgaaatagtattaagatcacagagaagaacatggctcaacaggtactcttttgactattatattcatatgttagtttttgga |
256 |
Q |
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| T |
41359181 |
aacattctacaactatagtgaaatagtattaagatcacagagaagaacatggctcaacaggtactcttttgactattatattcatatattagtttttgga |
41359082 |
T |
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| Q |
257 |
attttcctcatgaattttcattgtattcatgnnnnnnnnnn-atacaatggatttgatgttagaatgaggggtggccactgggtttacagccactgcatg |
355 |
Q |
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| T |
41359081 |
attttc-------------attgtattcatgtttttttttttatacaatggatttgatgttagaatgaggggtggccactgggtttacagccactgcatg |
41358995 |
T |
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| Q |
356 |
caaggatggagattgttagtaattggaacaactctggatcaatgtcatttaacaccttgct |
416 |
Q |
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| T |
41358994 |
caaggatggagattgttagtaatgggaacaactctggatcaatgtcatttaacaccttgct |
41358934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 41359286 - 41359188
Alignment:
| Q |
18 |
ataatggctattacctgtcgcaaatgataaacatcctcactcgttatgtcactcttttttgacctcattattcacagctagctcttttccataattttc |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
41359286 |
ataatggttattacctgtcgcaaatgataaacatcctcactcgttatgtcactcttttttgacctcattattcacagctagctctttgcaataattttc |
41359188 |
T |
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