View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21060_high_3 (Length: 364)
Name: NF21060_high_3
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21060_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 14044617 - 14044493
Alignment:
| Q |
145 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtacttggcattttttcacactctgttagtagaagattaggaactcattcattgc |
244 |
Q |
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| T |
14044617 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtactttgcattttttcacactctgttagtagaagattaggaactcattcattgc |
14044518 |
T |
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| Q |
245 |
agatttcatggaaaaatatatcata |
269 |
Q |
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| T |
14044517 |
agatttcatggaaaaatatatcata |
14044493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 13930482 - 13930401
Alignment:
| Q |
49 |
tatacatgagagtaaaacttaacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
130 |
Q |
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| T |
13930482 |
tatacatgagagtaaaacttaacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
13930401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 14044329 - 14044249
Alignment:
| Q |
271 |
tgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
351 |
Q |
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| T |
14044329 |
tgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
14044249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 13930147 - 13930070
Alignment:
| Q |
273 |
tagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
351 |
Q |
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| T |
13930147 |
tagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tgtggcgccgccgcctccgtctgtttc |
13930070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 14044663 - 14044622
Alignment:
| Q |
65 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt |
106 |
Q |
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| T |
14044663 |
acttaacacaacatgtaagaatctatcgttaatgtagaattt |
14044622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 13476292 - 13476342
Alignment:
| Q |
80 |
taagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
130 |
Q |
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| T |
13476292 |
taagaatctatcgttaatgtagaattggtttcgcactctgtctgcaacttt |
13476342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
192 |
acttggcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
249 |
Q |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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