View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21060_low_5 (Length: 316)
Name: NF21060_low_5
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21060_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 15393457 - 15393772
Alignment:
| Q |
11 |
cagagagttacatatctgt---tacacggtggtgatttggcgtcgttgaggatcggcggtgtgacaatatgttgggaagaacggacatttgttaaataat |
107 |
Q |
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| T |
15393457 |
cagagagttacatatctgtaattacacggtggtgatttggcgtcgttgaggatcggcggtgagacattatgttgggaagaacggacatttgttaaataat |
15393556 |
T |
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| Q |
108 |
ttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttc-------agaatgttttgttttctgttaggagcc |
200 |
Q |
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| T |
15393557 |
ttgtttacttagctaaaatcttgttgatgaatggaaccacccagtgaagtgttttacttttgcttcattaaagagcatgttttgttttctgttaggagcc |
15393656 |
T |
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| Q |
201 |
ctcaaacatcagttcaaaaagttagatagatagaaaatctttgtttgattttcaataaataataatatcactcgagaaatgatgtaaaatgatcgttgat |
300 |
Q |
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| T |
15393657 |
ctcaaacatcagttcaaaaagttagatagaaagaaaatctttgtttgattttcaataaatcataatatcactcgagaaatgatgtaaaatgatcgttgat |
15393756 |
T |
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| Q |
301 |
gtcactttaataataa |
316 |
Q |
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| T |
15393757 |
gtcactttaataataa |
15393772 |
T |
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