View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21060_low_7 (Length: 245)

Name: NF21060_low_7
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21060_low_7
NF21060_low_7
[»] chr1 (9 HSPs)
chr1 (16-207)||(10649980-10650174)
chr1 (15-126)||(20817761-20817873)
chr1 (35-170)||(26858719-26858856)
chr1 (87-171)||(15570918-15571002)
chr1 (82-137)||(3660568-3660622)
chr1 (32-137)||(26331407-26331510)
chr1 (32-207)||(34487687-34487864)
chr1 (82-126)||(36755694-36755738)
chr1 (15-75)||(40817633-40817693)
[»] chr7 (10 HSPs)
chr7 (1-207)||(31270593-31270799)
chr7 (14-171)||(11693544-11693700)
chr7 (8-154)||(13258636-13258778)
chr7 (8-154)||(13265976-13266118)
chr7 (82-171)||(24676990-24677079)
chr7 (91-171)||(4123423-4123503)
chr7 (92-154)||(12223081-12223144)
chr7 (16-67)||(1675719-1675770)
chr7 (44-154)||(4514583-4514694)
chr7 (92-158)||(19416735-19416802)
[»] chr8 (9 HSPs)
chr8 (7-153)||(3318590-3318737)
chr8 (15-207)||(33929159-33929351)
chr8 (91-197)||(20704115-20704222)
chr8 (43-125)||(19372426-19372508)
chr8 (69-171)||(25621357-25621459)
chr8 (34-176)||(12842634-12842777)
chr8 (7-125)||(19342693-19342814)
chr8 (50-116)||(25662739-25662805)
chr8 (92-141)||(24498752-24498801)
[»] chr6 (4 HSPs)
chr6 (9-199)||(33545741-33545932)
chr6 (22-153)||(12870570-12870700)
chr6 (32-158)||(8863026-8863154)
chr6 (32-139)||(8868664-8868773)
[»] chr4 (7 HSPs)
chr4 (35-143)||(24716395-24716503)
chr4 (1-123)||(17651790-17651912)
chr4 (5-118)||(1186179-1186291)
chr4 (41-124)||(9883826-9883909)
chr4 (16-121)||(9856031-9856134)
chr4 (15-172)||(35150909-35151067)
chr4 (15-57)||(39938218-39938260)
[»] chr3 (1 HSPs)
chr3 (35-139)||(55212555-55212658)
[»] chr5 (6 HSPs)
chr5 (39-126)||(25955025-25955112)
chr5 (69-126)||(22641952-22642009)
chr5 (58-206)||(17772114-17772262)
chr5 (7-126)||(15991028-15991148)
chr5 (1-60)||(17771908-17771967)
chr5 (109-197)||(19761099-19761187)
[»] scaffold0057 (1 HSPs)
scaffold0057 (92-167)||(67608-67683)
[»] chr2 (5 HSPs)
chr2 (15-158)||(30461961-30462105)
chr2 (117-206)||(26275625-26275714)
chr2 (15-126)||(27918899-27919009)
chr2 (92-143)||(16735558-16735609)
chr2 (44-172)||(18114245-18114373)
[»] scaffold0466 (1 HSPs)
scaffold0466 (72-171)||(5182-5281)
[»] scaffold0008 (1 HSPs)
scaffold0008 (40-154)||(3753-3867)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 10649980 - 10650174
Alignment:
Q  16 aagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  10649980 aagtgtaaatacaattaaatttatttgtaaactctgattgtagaagtcctcaagtgtgagataaggaaattttagacttgtgtgtttaagtaattgtaat 10650079  T
Q  116 cttgtgtgattttcgtggaaaatctcttagaagt---gcaagaggattggactaacctcaaattatagggaaaactaggataattgcttgtgttg 207  Q
    ||||| ||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  10650080 cttgtatgattatcgtggaaaatctcttagaagtacagcaagaggattggactaacctcaaattatagggggaattaggataattgcttgtgttg 10650174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 20817761 - 20817873
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    |||||||||||||||| ||| ||||||| |||||||| |||| ||||||||||   || |||||||  |||| ||||| |||||||| ||||||| ||||    
T  20817761 aaagtgtaaacacaatcaaacttatttgataaactcttattgcagaagtcctcttatgcgagacaataaaatcttagatttgtgtgtctaagtaactgta 20817860  T
Q  114 atcttgtgtgatt 126  Q
    |||||||||||||    
T  20817861 atcttgtgtgatt 20817873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 26858719 - 26858856
Alignment:
Q  35 tttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaag-taattgtaatcttgtgtgattttcgtg 132  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||| || |||   |||||||||||| ||  |||||||| || |||||||| | |||    
T  26858719 tttatttgataaactctgattgtagaagtcctcttgtgtgagtcaagaaagtttcttacttgtgtgtttgagaaaattgtaacctagtgtgattatagtg 26858818  T
Q  133 gaaaatctcttagaagtgcaagaggattggactaacct 170  Q
     ||||||| || |||||||||| ||| || ||||||||    
T  26858819 aaaaatcttttggaagtgcaaggggactgaactaacct 26858856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 15570918 - 15571002
Alignment:
Q  87 ttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 171  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||| ||||| || |  || |||||| ||||||||||||||||    
T  15570918 ttagacttgtgtgtttaaacaattgtaatcttgtgtgattctagtgaaaaatttcatgaaaatgcaaggggattggactaacctc 15571002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 3660622 - 3660568
Alignment:
Q  82 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaa 137  Q
    |||||||||||||||||||||||||  |||||||||||||||||| | ||||||||    
T  3660622 aaattttagacttgtgtgtttaagt-tttgtaatcttgtgtgattatagtggaaaa 3660568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 26331510 - 26331407
Alignment:
Q  32 aaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgt 131  Q
    |||||||||||| ||||||||||||||||||||| | |   |||  ||| |||| || ||||||||||| ||||||| ||||||||||||| ||| | ||    
T  26331510 aaatttatttgtgaactctgattgtagaagtccttaag-aagaggtaag-aaatctttgacttgtgtgtctaagtaactgtaatcttgtgtaattatagt 26331413  T
Q  132 ggaaaa 137  Q
    ||||||    
T  26331412 ggaaaa 26331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 34487864 - 34487687
Alignment:
Q  32 aaatttatttgtaaa-ctctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcg 130  Q
    ||||||||||||||| ||||||||||| ||||| ||  |||||||  ||| || | |   |||||||||||  || |||||||||||||||||||| | |    
T  34487864 aaatttatttgtaaaactctgattgtataagtcatcttgtgtgagttaaggaagtctctaacttgtgtgttggagaaattgtaatcttgtgtgattatag 34487765  T
Q  131 tggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataa-ttgcttgtgttg 207  Q
    || ||| ||  |  ||||||||||  || ||||||||||||  | ||| ||  |||||||||||| ||||||||||||    
T  34487764 tgaaaattccatgggaagtgcaaggagactggactaacctcggaatatgggataaactaggataatttgcttgtgttg 34487687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 36755694 - 36755738
Alignment:
Q  82 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 126  Q
    |||| |||||||||||||| || ||||||||||||||||||||||    
T  36755694 aaatcttagacttgtgtgtctaggtaattgtaatcttgtgtgatt 36755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 40817633 - 40817693
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgag 75  Q
    ||||| |||||||| ||||| |||||  |||||||||| |||||||||||||  |||||||    
T  40817633 aaagtataaacacatttaaacttattgttaaactctgactgtagaagtcctcttgtgtgag 40817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 31270799 - 31270593
Alignment:
Q  1 actctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgt 100  Q
    ||||| ||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||| |||||||    
T  31270799 actctctgattatcaaagtgtaaacaaaatcaaatttatttgtaaactctgattgtagaagtcctcaagtgtgaggcaaggaaatattagacatgtgtgt 31270700  T
Q  101 ttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgct 200  Q
     ||||||||||||||||||||||||| | || |||||||||||||||||||||| | | | ||||||||||| ||| |||||  ||| | ||||||||||    
T  31270699 ctaagtaattgtaatcttgtgtgattatagtagaaaatctcttagaagtgcaagggaactagactaacctcagattgtagggtgaaccatgataattgct 31270600  T
Q  201 tgtgttg 207  Q
    |||||||    
T  31270599 tgtgttg 31270593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 11693544 - 11693700
Alignment:
Q  14 caaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    |||||||||| |||||| || ||||||||||||||||||||||| ||||||| | |||||||||||| |||| |||||||||||||| ||||||||||||    
T  11693544 caaagtgtaagcacaatcaactttatttgtaaactctgattgtacaagtccttaagtgtgagacaaggaaatattagacttgtgtgtctaagtaattgta 11693643  T
Q  114 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 171  Q
    ||||||||||||| | || ||||||| |||  ||||||||| ||||||||||||||||    
T  11693644 atcttgtgtgattatagtcgaaaatcccttgaaagtgcaag-ggattggactaacctc 11693700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13258778 - 13258636
Alignment:
Q  8 gagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagta 107  Q
    ||||| ||||||||||||||||| |||||||||||||||||    |||||||| || ||| ||||||| |||  |||| ||| |||||||||| ||| ||    
T  13258778 gagtatcaaagtgtaaacacaatcaaatttatttgtaaact----ttgtagaattcttcaagtgtgaggcaatgaaatcttaaacttgtgtgtctaaata 13258683  T
Q  108 attgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaag 154  Q
    ||| |||| || || |||| | |||||||||| ||||||||||||||    
T  13258682 attataattttatgggattatagtggaaaatcccttagaagtgcaag 13258636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13266118 - 13265976
Alignment:
Q  8 gagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagta 107  Q
    ||||| ||||||||||||||||| |||||||||||||||||    |||||||| || ||| ||||||| |||  |||| ||| |||||||||| ||| ||    
T  13266118 gagtatcaaagtgtaaacacaatcaaatttatttgtaaact----ttgtagaattcttcaagtgtgaggcaatgaaatcttaaacttgtgtgtctaaata 13266023  T
Q  108 attgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaag 154  Q
    ||| |||| || || |||| | |||||||||| ||||||||||||||    
T  13266022 attataattttatgggattatagtggaaaatcccttagaagtgcaag 13265976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 24677079 - 24676990
Alignment:
Q  82 aaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 171  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |  || ||||||||||||||||| |||  || ||||||| ||||    
T  24677079 aaatcttagacttgtgtgttaaagtaattgtaatcttgtgtgattatactgaaaaatctcttagaagtgtaaggagactggactagcctc 24676990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 4123423 - 4123503
Alignment:
Q  91 acttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 171  Q
    |||||||||| | || |||||||||||||||||||| | ||| |||||||||  |||||| ||||||| || |||||||||    
T  4123423 acttgtgtgtctgagaaattgtaatcttgtgtgattatagtgaaaaatctctgggaagtgtaagaggactgaactaacctc 4123503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 12223081 - 12223144
Alignment:
Q  92 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatct-cttagaagtgcaag 154  Q
    ||||||||||| || |||||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  12223081 cttgtgtgtttgagcaattgtaatcttgtgtgattatagtgaaaaatctccttagaagtgcaag 12223144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 1675719 - 1675770
Alignment:
Q  16 aagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctca 67  Q
    |||||||||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1675719 aagtgtaaacaccaatcaatttatttgtaaactttgattgtagaagttctca 1675770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 4514583 - 4514694
Alignment:
Q  44 aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgg-aaaatctct 142  Q
    ||||||| |||||| ||||||||  ||||||| |||| ||   || ||||||||||||  || ||||| |||||||||||||| | |||| |||||||||    
T  4514583 aaactctaattgtataagtcctcttgtgtgaggcaaggaagactttgacttgtgtgttggagaaattgcaatcttgtgtgattatagtggaaaaatctct 4514682  T
Q  143 tagaagtgcaag 154  Q
    | ||||| ||||    
T  4514683 tggaagttcaag 4514694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 19416802 - 19416735
Alignment:
Q  92 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtg-caagagga 158  Q
    |||||||| || || |||||||||||||||||||| | ||| ||||||||||| ||||| ||||||||    
T  19416802 cttgtgtgcttgagcaattgtaatcttgtgtgattatagtgaaaaatctcttataagtgacaagagga 19416735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 3318737 - 3318590
Alignment:
Q  7 tgagtaacaaagtgtaaacacaattaaa-tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaag 105  Q
    |||||| ||||||||||||||| | ||| ||||||||||||||||  |||||||||||||||  |||||| ||||||||| ||||| ||||| || ||||    
T  3318737 tgagtatcaaagtgtaaacacattcaaactttatttgtaaactcttgttgtagaagtcctcaaatgtgaggcaagtaaatcttagagttgtgcgtctaag 3318638  T
Q  106 taattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaa 153  Q
    ||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  3318637 taattgtaatcttgtgtgattattgtggaaaatcccttggaagtgcaa 3318590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 33929159 - 33929351
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttgt-aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    |||||||||||| |||   |||||||||| ||||| |||| ||| ||||||||  |||||||  || |||| | |  ||||| |||||| |  |||| ||    
T  33929159 aaagtgtaaacagaatctcatttatttgttaaactttgatggtataagtcctcttgtgtgaggtaa-taaagtctcaacttgcgtgtttgataaattata 33929257  T
Q  114 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgcttgtgttg 207  Q
    ||||||||||||| | ||| ||||||  || |||||||||||||| ||||||||||||  ||||| | |  |||||||||||||||||||||||    
T  33929258 atcttgtgtgattatagtgaaaaatcatttggaagtgcaagaggactggactaacctcggattattgagtgaactaggataattgcttgtgttg 33929351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 20704222 - 20704115
Alignment:
Q  91 acttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttag-aagtgcaagaggattggactaacctcaaattatagggaaaacta 189  Q
    |||||||||||| || | |||||||||||||||||| | ||||||||||| |||| ||||||||| ||| |||||||||||| |||| | |||  ||| |    
T  20704222 acttgtgtgtttgagcagttgtaatcttgtgtgattgtagtggaaaatctattagaaagtgcaaggggactggactaacctcgaattgtggggtgaacaa 20704123  T
Q  190 ggataatt 197  Q
    ||||||||    
T  20704122 ggataatt 20704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 19372426 - 19372508
Alignment:
Q  43 taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgat 125  Q
    |||||| |||| ||||||||||||| ||||||| |||||   |||||||| ||||| | ||||||||||||| ||||||||||    
T  19372426 taaactttgatcgtagaagtcctcaagtgtgaggcaagttttttttagacatgtgtatgtaagtaattgtaaccttgtgtgat 19372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 25621459 - 25621357
Alignment:
Q  69 gtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaac 168  Q
    ||||||| |||| ||||||||| |||||||||||| |||||| ||||| | ||||||| | |||||||||| |||| |||| ||||  |  |||||||||    
T  25621459 gtgtgaggcaaggaaattttaggcttgtgtgtttatgtaattataatcctttgtgattatagtggaaaatcccttaaaagtacaaggtgtctggactaac 25621360  T
Q  169 ctc 171  Q
    |||    
T  25621359 ctc 25621357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 12842777 - 12842634
Alignment:
Q  34 atttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtg 132  Q
    ||||||||| |||||||| |||||| || |||||  ||||||| |||  || | | | |||||||||||| |  |||||||||||||||||||| | ||     
T  12842777 atttatttgataaactctaattgtataattcctcttgtgtgaggcaaagaagtctcaaacttgtgtgtttgatcaattgtaatcttgtgtgattatagta 12842678  T
Q  133 gaaaatctcttagaagtgcaagaggattggactaacctcaaatt 176  Q
     ||||| | || |||||| ||| ||| |||||||||||||||||    
T  12842677 aaaaatattttggaagtgtaaggggactggactaacctcaaatt 12842634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 19342693 - 19342814
Alignment:
Q  7 tgagtaacaaagtgtaaacacaattaaatttatttgt---aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgttta 103  Q
    |||||| ||||||||||||||||| |  ||| ||| |   ||||| |||| ||||||||||||| |||||||  ||||   |||||||| ||||| | ||    
T  19342693 tgagtatcaaagtgtaaacacaataattttttttttttttaaactttgatcgtagaagtcctcaagtgtgaggaaagttttttttagacatgtgtatgta 19342792  T
Q  104 agtaattgtaatcttgtgtgat 125  Q
    ||||||||||| ||||||||||    
T  19342793 agtaattgtaaccttgtgtgat 19342814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 25662805 - 25662739
Alignment:
Q  50 tgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatc 116  Q
    ||||| ||||| ||| || ||||||| |||| ||||||||| ||||||||| || ||||||||||||    
T  25662805 tgattttagaattccacatgtgtgaggcaaggaaattttaggcttgtgtgtctacgtaattgtaatc 25662739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 24498752 - 24498801
Alignment:
Q  92 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctc 141  Q
    |||||||| || || |||||||||||||||||||| | ||||||||||||    
T  24498752 cttgtgtgcttgagcaattgtaatcttgtgtgattatagtggaaaatctc 24498801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 33545932 - 33545741
Alignment:
Q  9 agtaacaaagtgtaaaca-caattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagta 107  Q
    |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||| | |||||||| | |||| |||||||||||||| ||||||    
T  33545932 agtatcaaagtgtaaacatcaatcaaatttatctgtaaactctgattgtagaagtcatcaag-gtgagacatggaaatcttagacttgtgtgtctaagta 33545834  T
Q  108 attgtaatcttgtgtgattttcgtggaaaatctctt-agaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgc 199  Q
    || |||||||||||||||| | ||| |||||||||| | || || |||||| || ||||| |||| | ||  ||||  |||||||||||||||    
T  33545833 atggtaatcttgtgtgattattgtgaaaaatctcttgaaaaatggaagagggtttgactagcctcgacttgcagggtgaactaggataattgc 33545741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 12870570 - 12870700
Alignment:
Q  22 aaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtg 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || ||||||  |||  |||  |||||||| ||||||||| ||||||||||||||||    
T  12870570 aaacacaatcaaatttatttgtaaactctgattgtagaagtccacaagtgtgaagcaaagaaaccttagactt-tgtgtttaaataattgtaatcttgtg 12870668  T
Q  122 tgattttcgtggaaaatctcttagaagtgcaa 153  Q
    ||||| | ||  ||||||||||  ||||||||    
T  12870669 tgattatagtaaaaaatctcttgaaagtgcaa 12870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 8863026 - 8863154
Alignment:
Q  32 aaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtg--tgtttaagtaattgtaatcttgtgtgattttc 129  Q
    ||||||||||| |||||||||||||||||||||||  ||||||| |||  |||| |||||||||||  |||  ||||||||||||| || ||||||| |     
T  8863026 aaatttatttgcaaactctgattgtagaagtcctcttgtgtgaggcaaaaaaatcttagacttgtgtatgtcaaagtaattgtaatattatgtgattatg 8863125  T
Q  130 gtggaaaatctcttagaagtgcaagagga 158  Q
    ||| |||||| |||  || ||||||||||    
T  8863126 gtgaaaaatcccttgaaaatgcaagagga 8863154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 8868664 - 8868773
Alignment:
Q  32 aaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgttt--aagtaattgtaatcttgtgtgattttc 129  Q
    ||||||||||||||||||| ||| | |||||||||  ||||||| |||| |||| |||||| ||||||| |  |||||||||| || |||||||||| |     
T  8868664 aaatttatttgtaaactctaattttggaagtcctcttgtgtgaggcaaggaaatcttagacatgtgtgtgtcgaagtaattgtcatattgtgtgattatg 8868763  T
Q  130 gtggaaaatc 139  Q
    ||| ||||||    
T  8868764 gtgaaaaatc 8868773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 24716395 - 24716503
Alignment:
Q  35 tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgga 134  Q
    ||||||||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||||| ||||||||||||||  ||||||||||| ||| |    
T  24716395 tttatttgtaaactctgattgtagaagtcctcttatgtgaggcaaggaaattttagacttgtgtgtctaagtaattgtaatgatgtgtgattttagtgaa 24716494  T
Q  135 aaatctctt 143  Q
    |||||||||    
T  24716495 aaatctctt 24716503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17651790 - 17651912
Alignment:
Q  1 actctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgt 100  Q
    ||||| ||| || |||||||||||||  | ||||||||||| |||||||| ||||| || ||||||| ||||||| |||| |||| |||||||||| |||    
T  17651790 actctctgattatcaaagtgtaaacatgactaaatttatttataaactcttattgtggatgtcctcaagtgtgaggcaagaaaatcttagacttgtatgt 17651889  T
Q  101 ttaagtaattgtaatcttgtgtg 123  Q
     ||||||||||| ||||||||||    
T  17651890 ctaagtaattgtcatcttgtgtg 17651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 1186179 - 1186291
Alignment:
Q  5 tatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaa 104  Q
    |||||||| |||||| |||||||||| ||||||||||||| | | | |||||||||||||||| | ||||   ||| |||| |||||||||||||| |||    
T  1186179 tatgagtatcaaagtttaaacacaatcaaatttatttgtatatttttattgtagaagtcctcaag-gtgatctaaggaaatcttagacttgtgtgtctaa 1186277  T
Q  105 gtaattgtaatctt 118  Q
    ||||||||||||||    
T  1186278 gtaattgtaatctt 1186291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 9883826 - 9883909
Alignment:
Q  41 tgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtga 124  Q
    ||||||||||||||||| || |||||  |||||||||||| || ||||| |||||||||||| || | ||||||||||||||||    
T  9883826 tgtaaactctgattgtataattcctcttgtgtgagacaaggaagttttaaacttgtgtgtttgagcagttgtaatcttgtgtga 9883909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 9856031 - 9856134
Alignment:
Q  16 aagtgtaaacacaattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaat 115  Q
    |||||||||||||| | | |||||||||||||||||||||||||| |||||| | | |||||| | |||||||| || | || || |||||||||||| |    
T  9856031 aagtgtaaacacaaatcactttatttgtaaactctgattgtagaaatcctcaag-gggagacatg-aaattttaaacctttgcgtctaagtaattgtact 9856128  T
Q  116 cttgtg 121  Q
    ||||||    
T  9856129 cttgtg 9856134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 35150909 - 35151067
Alignment:
Q  15 aaagtgtaaacacaattaaa-tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    |||||||||||||||| ||| |||||   ||||||||| ||||||||  ||||  ||||||  |||| |||| |||||||||  ||| ||| ||||||||    
T  35150909 aaagtgtaaacacaatcaaactttatccataaactctggttgtagaatacctcttgtgtgaagcaagaaaatcttagacttggatgtctaaataattgta 35151008  T
Q  114 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctca 172  Q
    ||||||| |||||  |||| ||| ||  ||| ||||||| ||| | |||||||| ||||    
T  35151009 atcttgtctgattaacgtgaaaagtcatttaaaagtgcatgagaactggactaatctca 35151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 39938260 - 39938218
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttgtaaactctgattgta 57  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  39938260 aaagtgtaaacacatacaaatttatttgtaaactctgattgta 39938218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 55212658 - 55212555
Alignment:
Q  35 tttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtgga 134  Q
    |||||||||||||||||||||| ||||||  |  |||||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  55212658 tttatttgtaaactctgattgttgaagtcaccttgtgtgagacaagaaaatcttaaacttgtgtg-ttaagtaattgtaatctcgtgtgattatagtgga 55212560  T
Q  135 aaatc 139  Q
    |||||    
T  55212559 aaatc 55212555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 25955025 - 25955112
Alignment:
Q  39 tttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 126  Q
    ||||||||||||||||||||||||||||  |||| || |||  |||| |||||||||||||| ||| |||||||||||||||| ||||    
T  25955025 tttgtaaactctgattgtagaagtcctcttgtgtaaggcaatgaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgatt 25955112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 22642009 - 22641952
Alignment:
Q  69 gtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 126  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  22642009 gtgtgaggcaaggaaatcttagacttgtgtgtttaagtaattgtaatcttgtgtgatt 22641952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 17772114 - 17772262
Alignment:
Q  58 gaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagagg 157  Q
    |||||||||  ||||||| |||  |||| ||| | |||||||| |||||||||||||| || | ||||| | ||||||||| | ||  |||||||||  |    
T  17772114 gaagtcctcttgtgtgaggcaaagaaatcttatatttgtgtgtctaagtaattgtaatattttatgattatagtggaaaattttttgaaagtgcaaggag 17772213  T
Q  158 attggactaacctcaaattatagggaaaactaggataattgcttgtgtt 206  Q
    ||||||| ||| || |||| ||||   ||||||||||||||||||||||    
T  17772214 attggaccaacatcgaattgtaggatgaactaggataattgcttgtgtt 17772262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 15991028 - 15991148
Alignment:
Q  7 tgagtaacaaagtgtaaacac-aattaaatttatttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagactt-gtgtgtttaa 104  Q
    |||||| |||||||||||||| ||| ||||||||||||||| ||| |||| |||||| |||| | ||||| |||  |||| ||| |||| | |||| |||    
T  15991028 tgagtatcaaagtgtaaacaccaatcaaatttatttgtaaattctaattgaagaagttctcaag-gtgaggcaatgaaatcttaaactttgcgtgtctaa 15991126  T
Q  105 gtaattgtaatcttgtgtgatt 126  Q
    |||||||||||||||| |||||    
T  15991127 gtaattgtaatcttgtatgatt 15991148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17771908 - 17771967
Alignment:
Q  1 actctatgagtaacaaagtgtaaacacaattaaatttatttgtaaactctgattgtagaa 60  Q
    ||||| |||||  |||||| |||||||||| ||| |||||||||||||||||||||||||    
T  17771908 actctttgagtgtcaaagtctaaacacaatcaaacttatttgtaaactctgattgtagaa 17771967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 19761187 - 19761099
Alignment:
Q  109 ttgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataatt 197  Q
    |||||||||| ||||||| | ||| |||||| |||  ||||||||| ||| ||||||||||||||||| |  || |||| |||||||||    
T  19761187 ttgtaatcttatgtgattatagtgaaaaatcacttgaaagtgcaaggggaatggactaacctcaaattgtgagggaaaccaggataatt 19761099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 67683 - 67608
Alignment:
Q  92 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaa 167  Q
    ||||||||| ||||||||||||||||||| || || | ||| |||||||||||||| |||||||||| | ||||||    
T  67683 cttgtgtgtctaagtaattgtaatcttgtatggttatagtgaaaaatctcttagaaatgcaagaggactagactaa 67608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 30462105 - 30461961
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttg-taaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    ||||||||||||||   ||||||||||| |||||| ||||| || ||||||||  |||||||||||| || | |||   ||||||| || || |||||||    
T  30462105 aaagtgtaaacacacacaaatttatttgataaactatgattttataagtcctcttgtgtgagacaaggaagtcttaattttgtgtgcttgagcaattgta 30462006  T
Q  114 atcttgtgtgattttcgtggaaaatctcttagaagtgcaagagga 158  Q
    ||||||||| ||| | ||| ||||||  ||  |||||||||||||    
T  30462005 atcttgtgtaattatagtgaaaaatccattgaaagtgcaagagga 30461961  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 26275625 - 26275714
Alignment:
Q  117 ttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctcaaattatagggaaaactaggataattgcttgtgtt 206  Q
    |||||||||| | ||| |||||||||||||||||||||  || |||||||||||| |||| | |||  ||| | |||||||| |||||||    
T  26275625 ttgtgtgattatagtgaaaaatctcttagaagtgcaagtagactggactaacctcgaattgtggggtgaaccaagataattgtttgtgtt 26275714  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 27918899 - 27919009
Alignment:
Q  15 aaagtgtaaacacaattaaatttatttgt-aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgta 113  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||  || |||| |||| || | |  ||||||||| ||  || |||||||    
T  27918899 aaagtgtaaacaca-ttaaatttatctgttaaactctgattgtataagtcctcttgtatgag-caaggaagtctctgacttgtgtattggagcaattgta 27918996  T
Q  114 atcttgtgtgatt 126  Q
    |||||||||||||    
T  27918997 atcttgtgtgatt 27919009  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 16735558 - 16735609
Alignment:
Q  92 cttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctctt 143  Q
    |||||||| ||||| |||||||||||||||||||| | ||| ||||||||||    
T  16735558 cttgtgtgcttaagcaattgtaatcttgtgtgattatagtgaaaaatctctt 16735609  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 18114373 - 18114245
Alignment:
Q  44 aaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctctt 143  Q
    |||||| ||||||| |||| |||  || |||| |||| || ||| | |||||||||||  || | ||||||| |||||||||| | ||| ||||| ||||    
T  18114373 aaactcggattgtataagtactcttgtttgaggcaaggaagtttcaaacttgtgtgttggagcacttgtaattttgtgtgattatagtgaaaaatatctt 18114274  T
Q  144 agaagtgcaagaggattggactaacctca 172  Q
     |||||  ||| ||| |||||||||||||    
T  18114273 ggaagtataaggggactggactaacctca 18114245  T

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Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 5182 - 5281
Alignment:
Q  72 tgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatctcttagaagtgcaagaggattggactaacctc 171  Q
    |||| |||| ||||||||| ||||||||| || |||||||||||| | ||||||| | ||| |||||| |||| ||||| |||  || ||||||||||||    
T  5182 tgaggcaaggaaattttaggcttgtgtgtctacgtaattgtaatcctttgtgattatagtgaaaaatcccttaaaagtgtaaggtgactggactaacctc 5281  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 3867 - 3753
Alignment:
Q  40 ttgtaaactctgattgtagaagtcctcaggtgtgagacaagtaaattttagacttgtgtgtttaagtaattgtaatcttgtgtgattttcgtggaaaatc 139  Q
    ||||||||||| |||||| |||  |||  ||||||| |||| |||| | | |||| |||||||||| | |||||||||||||||||| |  || ||||||    
T  3867 ttgtaaactcttattgtataaggtctcttgtgtgaggcaaggaaatctcaaacttatgtgtttaagaagttgtaatcttgtgtgattgtattgaaaaatc 3768  T
Q  140 tcttagaagtgcaag 154  Q
     || |||||||||||    
T  3767 cctcagaagtgcaag 3753  T

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