View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21060_low_8 (Length: 238)
Name: NF21060_low_8
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21060_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 36954996 - 36955165
Alignment:
| Q |
15 |
attttaaccacattattagtctaatcaaaccaacaaccgtcatataacagaaacaaaaactatgatgttgccgtcattacgtgcttatgacctcgaaatc |
114 |
Q |
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| T |
36954996 |
attttaaccacattattagtctaatcaaaccaa-----gtcatataacagaaacaaaaactatgatgttgccgtcattacgtgcttatgacctcgaaatc |
36955090 |
T |
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| Q |
115 |
tcatatttaatattcaaatatttatttttcgaaatcccagaattcactcaacaaccatataaattcatctttatc |
189 |
Q |
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| T |
36955091 |
tcatatttaatattcaaatatttctttttcgaaatcccagaattcacgtaacaaccatataaattcatctttatc |
36955165 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 36955182 - 36955239
Alignment:
| Q |
173 |
ataaattcatctttatcaattgttcacaatacacacattttgtgcattgtttcatctc |
230 |
Q |
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| T |
36955182 |
ataaattcatctttatcaattgttcacaatacacacattttgtgcattgtttcatctc |
36955239 |
T |
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