View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21060_low_9 (Length: 231)
Name: NF21060_low_9
Description: NF21060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21060_low_9 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15393881 - 15394117
Alignment:
| Q |
1 |
ttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaatgttttctgtannnnnnn------g |
94 |
Q |
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| T |
15393881 |
ttatagatttgtttgaatccttgctttgacttggcagttttttggtaactacataagtttttgttctgtttccaatgttttctgtatttttttttttttg |
15393980 |
T |
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| Q |
95 |
tgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcgaaatggcttcaccgttagagattg |
194 |
Q |
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| T |
15393981 |
tgatggttagggttacactgaggacaagggagtatcagatagaaattagtagttggaagttattgaatacagttcgaaatggcttcaccgttagagattg |
15394080 |
T |
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| Q |
195 |
atgaagagaatgataacaaaggtagtatgtgggattt |
231 |
Q |
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| T |
15394081 |
atgaagagaatgataacaaaggtagtatgtgggattt |
15394117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 15385586 - 15385682
Alignment:
| Q |
135 |
agaaattagtagttggaagttattgaatacagttcgaaatggcttcaccgttagagattgatgaagagaatgataacaaaggtagtatgtgggattt |
231 |
Q |
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| T |
15385586 |
agaacttaggagttggaagttattgaatcaagttctaaatggcttcgccgttagagattgacgaagagaatgataacaaaggcagtatgtgggattt |
15385682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 38669790 - 38669752
Alignment:
| Q |
193 |
tgatgaagagaatgataacaaaggtagtatgtgggattt |
231 |
Q |
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| T |
38669790 |
tgatgaagagggtgataacaaaggtagtatgtgggattt |
38669752 |
T |
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