View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21061_high_1 (Length: 574)
Name: NF21061_high_1
Description: NF21061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21061_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 23925048 - 23924962
Alignment:
| Q |
9 |
agcacagaaataaatgatgatgaaaatataagtaattagggagaagaaacgtttgggcgcatatccagttttaaggtaaagaaaata |
95 |
Q |
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| T |
23925048 |
agcacagaaataaatgatgatgaaaatataagtaattagggagaagaaacgtttggtcgcatatccagttttaaggtaaagaaaata |
23924962 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 478 - 555
Target Start/End: Complemental strand, 23924666 - 23924589
Alignment:
| Q |
478 |
caaattatgttaaattggtggctacctgttttggatccactatggtcacgaaaaaatcagtatcatttgtgtgctcag |
555 |
Q |
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| T |
23924666 |
caaattatgttaaattggtggctacctgttttggatccactatggtcacgaaaaaatcagtatcatttgtgtgctcag |
23924589 |
T |
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