View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21061_low_2 (Length: 499)
Name: NF21061_low_2
Description: NF21061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21061_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 3 - 499
Target Start/End: Original strand, 38816155 - 38816651
Alignment:
| Q |
3 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
102 |
Q |
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| T |
38816155 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
38816254 |
T |
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| Q |
103 |
acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
202 |
Q |
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| T |
38816255 |
acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
38816354 |
T |
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| Q |
203 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
302 |
Q |
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| T |
38816355 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
38816454 |
T |
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| Q |
303 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct |
402 |
Q |
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| T |
38816455 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct |
38816554 |
T |
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| Q |
403 |
cccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataacta |
499 |
Q |
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| T |
38816555 |
cccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataacta |
38816651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 216 - 365
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
216 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
315 |
Q |
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|||||||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
316 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
365 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
436 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
474 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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