View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21061_low_3 (Length: 223)
Name: NF21061_low_3
Description: NF21061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21061_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 14329816 - 14329619
Alignment:
| Q |
11 |
cgaataatatatcacagagggcttaggttcccttgagagtctatcacccacccaaattgtaaaatttaccgtaattaagatcatgaaagtataaatgaac |
110 |
Q |
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| T |
14329816 |
cgaagaatatatcacagagggcttaggttcccttgagagtctatcacccacctaaattgtaaaatttaccggaattaagatcatgaaagtataaatgaac |
14329717 |
T |
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| Q |
111 |
aaaaatgtaatgtaaggctcctgtcttgttggtttgtatatagaaattagaaaacatggcatagaaattggaaaacaacttgtcatagccatacatga |
208 |
Q |
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| T |
14329716 |
aaaaatgtaatgtaaggctcctgtcttgttggtttgtatatagaaattagaaaacatggcatagaaattggaaaacaacttgtcatagccatacatga |
14329619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 34194845 - 34194703
Alignment:
| Q |
17 |
atatatcacagagggcttaggttcccttgagagtctatcacccacccaaattgtaaaatttaccgtaattaagatcatgaaagtataaatgaacaaaaat |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | || || ||||||||||| |||||||||||||||| |
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| T |
34194845 |
atatatcacagaaggcttaggttcccttgagagtctatcacccacctgaattggaaaatttacaggaactaggatcatgaaagcataaatgaacaaaaat |
34194746 |
T |
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| Q |
117 |
gtaatgtaaggctcctgtcttgttggtttgtatatagaaatta |
159 |
Q |
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| T |
34194745 |
gtaatgtacggcttccgtcttgttggtttgtatatagaaatta |
34194703 |
T |
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