View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21062_high_4 (Length: 492)
Name: NF21062_high_4
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 3911018 - 3911271
Alignment:
| Q |
16 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3911018 |
ataacgatgtaatagcataaatagtgtaactagttagtgtgtataagatgagtgtctttactagtgtatgacccatttccccacaaactcacacagataa |
3911117 |
T |
|
| Q |
116 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3911118 |
tggcatagcaaaactgcaaagaaagtgacatctgagaatcaaaagttaaatccaacgacacaccacaccttactgttcactgtgttatttacttctacca |
3911217 |
T |
|
| Q |
216 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3911218 |
tgtctcaactcaaccacattgtcatagatagcacttgcatatacataacagttt |
3911271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 341 - 475
Target Start/End: Original strand, 3911343 - 3911477
Alignment:
| Q |
341 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3911343 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
3911442 |
T |
|
| Q |
441 |
agctagtagctatgttatgtttgtatggcagaaac |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3911443 |
agctagtagctatgttatgtttgtatggcagaaac |
3911477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University