View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21062_low_1 (Length: 520)
Name: NF21062_low_1
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 25575264 - 25574750
Alignment:
| Q |
1 |
ccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaacaacatggccaccttcatctggaaagtctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25575264 |
ccattcccgcagtcagttgccttgccatgagttggctcggcccctctaccaatgcgaccctggttaggaacaacatggccaccttcatctggaaagtctc |
25575165 |
T |
|
| Q |
101 |
ttcgacgannnnnnnnn-ctccatcgcaatacttaaaaccatctcgacaatactccccctcttcaacagactcgcccctttcaacaatatctgtattgtg |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25575164 |
ttcgacgatttttttcttctccatcgcaatacttaaaaccatctcgacgatactccccctcttcaacagactcgcccctttcaacaatatctgtattgtg |
25575065 |
T |
|
| Q |
200 |
attccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatctgtcaaaaatcctcttaccttgcaactcataggtatttccttttctt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25575064 |
attccatttctcccatccatcaaaaccttctttcctttctctttcgcccaatttgtcaaaaatcctcttaccttgcaactcataggtatttccttttctt |
25574965 |
T |
|
| Q |
300 |
tcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatctttctacctttcaattctc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
25574964 |
tcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttggaccacatcaaagtcaacagttccccacatatctttgtacctttcaattccc |
25574865 |
T |
|
| Q |
400 |
tcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaatgcccaaatctaccaaaaactcg |
499 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25574864 |
tcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccataaccttcttttttcacctgaacattacaacgcccaaatctaccaaaaactcg |
25574765 |
T |
|
| Q |
500 |
ctcaagttcatctct |
514 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25574764 |
ctcaagttcatctct |
25574750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University