View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21062_low_10 (Length: 354)
Name: NF21062_low_10
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 41080112 - 41079785
Alignment:
| Q |
20 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
119 |
Q |
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| T |
41080112 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
41080013 |
T |
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| Q |
120 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttgttgttggtgatgataga---aatgtgtgggacgattgcattgattactatcc |
216 |
Q |
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| T |
41080012 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttgttgttggtgatgatagaaataatgtgtgggacgattgcattgattactatcc |
41079913 |
T |
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| Q |
217 |
accacactctttggccaacccattcatggagaagtacggttggattaacaatattcaagatccaagcactttcaaactcaaacttgctgagtttcttctc |
316 |
Q |
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| T |
41079912 |
accacactctttggccaacccattcatggagaagtacggttggattaacaatattcaagatccaagcactttcaaactcaaacttgctgagtttcttctc |
41079813 |
T |
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| Q |
317 |
actcttaagtgagattcattatattcat |
344 |
Q |
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| T |
41079812 |
actcttaagtgagattcattatattcat |
41079785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 23073015 - 23072868
Alignment:
| Q |
20 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
119 |
Q |
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| T |
23073015 |
ggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtg |
23072916 |
T |
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| Q |
120 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
167 |
Q |
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| T |
23072915 |
ctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
23072868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 23077604 - 23077473
Alignment:
| Q |
36 |
gtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaa |
135 |
Q |
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| T |
23077604 |
gtagtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaa |
23077505 |
T |
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| Q |
136 |
cagttgttattgggaagtaatgagagatgttg |
167 |
Q |
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| T |
23077504 |
tagttgcttatgggaagtgatgaaagatgttg |
23077473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 23111322 - 23111469
Alignment:
| Q |
20 |
ggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtg |
119 |
Q |
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|||||||| || || ||||| |||||||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||| |
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| T |
23111322 |
ggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtg |
23111421 |
T |
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| Q |
120 |
ctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
167 |
Q |
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|||| ||||||||||| ||||| | |||||||| |||| |||||||| |
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| T |
23111422 |
ctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
23111469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 23072860 - 23072792
Alignment:
| Q |
184 |
aaatgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaagta |
252 |
Q |
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| T |
23072860 |
aaatgtttgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatggagaagta |
23072792 |
T |
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