View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21062_low_11 (Length: 298)

Name: NF21062_low_11
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21062_low_11
NF21062_low_11
[»] chr5 (1 HSPs)
chr5 (1-298)||(5216933-5217230)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 5216933 - 5217230
Alignment:
Q  1 cttatgtatctagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcatattagagtcggtttattcataaaatgtaccaaaaaag 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5216933 cttatgtatatagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcaaattagagtcggtttattcataaaatgtaccaaaaaag 5217032  T
Q  101 gacacaccagtttagaaattggaagacatatgaagtacagaaacctacggaacaccagatacgacattgacaccgatagtaattttaaaaaataacacta 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||    
T  5217033 gacacaccagtttagaaattggaaggcatatgaagtacagaaacctacggaacatcagatacgacatcgacacccatagtaattttagaaaataacacta 5217132  T
Q  201 tttagtttttgtttaagatcaccgcacatcattttagtttatgtttaaattcacgacaaatcattttgattcagatataaccatcgtaatatcaaata 298  Q
    ||||  || ||||||||||||| ||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  5217133 tttaacttatgtttaagatcactgcagatcattttagcttatgtttaagttcacgacaaatcactttgattcagatataactatcgtgataccaaata 5217230  T

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