View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21062_low_13 (Length: 262)
Name: NF21062_low_13
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 44221194 - 44221436
Alignment:
| Q |
20 |
aatctatctatatttccaaagccccctcaaatatttaaccaattctttgtcctaatttcctgatcctactatacacaaacatttactgtccattattatt |
119 |
Q |
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| T |
44221194 |
aatctatctatatttccaaagccccctcaa-tatttaaccaattctgtgtcctaatttcctgatcctgctatacacatacatttactgtccattattatt |
44221292 |
T |
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| Q |
120 |
agtatt---atagttatgaatcctcaaggttctaaattccaacaaccgtacaaccagccaccagccaccggtttcccagtgaatgtcggccaccagccta |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44221293 |
agtattattatagttatgaatcctcaaggttctaaattccaacaaccgtacaaccagccaccagccaccggtttcccggtgaatgtcggccaccagccta |
44221392 |
T |
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| Q |
217 |
atgccaaccaggaatggtccacgggtctatttgactgcttctcc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44221393 |
atgccaaccaggaatggtccacgggtctatttgactgcttctcc |
44221436 |
T |
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